Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2346 ATGGATACATCTCTCTCTTTCTCTAGACTCCTCTCTTCTTCCACCACCACATCACTCTTATCTCCCAAAACCAAAACCCTCTCTTCCAATTTTACCCTCCCCCTCAAACTCAACCGTTTCAACCCAAAACCTCTCCGATTTTCCACTTCATCCAAAATCTCCGCCACCATCTCCGTCGGCGACAAACTTCCCGAATCCACCTTCTCATACCTCGACCCCGCCGGCGAAGTCCAAACCATAACAGTTTCCGACCTAACAAAAGGCAAAAAAGCCGTTCTCTTCGCCGTTCCAGGAGCTTTCACACCAACATGCTCACAGAAACACTGCCAGCTTATCATGTGCGATTGTTCCAGCTTAATAGGGTGTTTTAGATTCGTTTTTCAAAAGCTTTGCGCGCGTAAATTGATTCTGATTATGGGAATACTATGCGGCTTTGTTTCTAGCAATTGGGCTGAATCAGTCATCCAATTCGATTTCGAAATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTCGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGTTGCACTACAGTTTGCCAAAGTTAAAATATTTAGAGGGAAAGTTTCCATTCAAGATGTTATGAATACCACAAGGATTTTTCTTGACCCTGAGATTAAAGAGACATCCGAGTTAAGAAAGGGATAA 1206 0.4088 MDTSLSFSRLLSSSTTTSLLSPKTKTLSSNFTLPLKLNRFNPKPLRFSTSSKISATISVGDKLPESTFSYLDPAGEVQTITVSDLTKGKKAVLFAVPGAFTPTCSQKHCQLIMCDCSSLIGCFRFVFQKLCARKLILIMGILCGFVSSNWAESVIQFDFEMATQFDMLCDVLPGHNSWKFKVRVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVVALQFAKVKIFRGKVSIQDVMNTTRIFLDPEIKETSELRKG* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2346 401 Gene3D - 273 401 IPR012340 -
Tpr7g2346 401 SUPERFAMILY Thioredoxin-like 56 111 IPR036249 -
Tpr7g2346 401 SUPERFAMILY Nucleic acid-binding proteins 280 399 IPR012340 -
Tpr7g2346 401 PANTHER PEROXIREDOXIN 4 109 IPR037944 -
Tpr7g2346 401 Pfam Redoxin 59 111 IPR013740 GO:0016491
Tpr7g2346 401 Pfam Domain of unknown function DUF223 203 296 IPR003871 -
Tpr7g2346 401 PANTHER PEROXIREDOXIN 4 109 - -
Tpr7g2346 401 SUPERFAMILY Nucleic acid-binding proteins 165 268 IPR012340 -
Tpr7g2346 401 CDD RPA1_DBD_A_like 181 267 - -
Tpr7g2346 401 CDD RPA1_DBD_B_like 300 400 - -
Tpr7g2346 401 Gene3D Glutaredoxin 54 168 - -
Tpr7g2346 401 Gene3D - 169 269 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2346 Tpr-Chr7 30440550 30443584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2346 173 399 Core DNA Replication Machinery Family AT4G19130 25.641 1.30e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2346 - - mtr:MTR_8g062030 262.692