Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g2344 | ATGTCTCCCACAAGGGAGCTTGCCATTCAGATTTCTGACCAGATTAAAGTTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTGACATTGTACAACAATCCATTGAGATAGCAAAGCGACCTCATATTATTGTTGGGACGCCTGGGCAAGTCTTGGATCACCTAAAAGAAACCAAAGGATTTTCTCTTGGTAGATTAAAATTCTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCAGCTACGATGACAAAGAAGGTCCGTAAGATCCAAAGGATGTGTTTAAGGGATCCTGTGAAGGTTGAAGTATCATCCAAGTACTCTACTGTGGACACACTGAAGGAGCATTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTCGTATACATTCTCATTGAAATGACTGGAAGTACGGCAATGGTATTCACTCGGACTTGTGATTCATCGCGGCTTCTGGCTTCAATTCTTACGAAACTTGGTTTGAAAGCCATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGACTCGAAGCCTTGGAACAGTTCAAGTCTGGGGAGTGCAAAATTCTCCTTTGTACTGACGTACTTAGTAGAGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGGCGTTCCGGTGTTGCCATTTCTCTTTTGAACCAGTATGAAGTGGGGTGGTTCAAAAAGATAGAAGAACTTATGGGAGGCAAGAAGGTACCATTGTATACTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAAGCCAAAAGATCAGCAGAAAAGGAAATTAAGGAATCCTATGAGAAGAAGAAAAGGAGGGGAGAAGGAGATTTAAGTGAGGATGAGGAGGATACTGACAAGTACTTAGGTCTCCTTTCATCAAAAATAAATAAGTCAGCAAAAAGAAAAAAGACAATGGCCGGCACCGGTAAGATAGATAACAAAAGGAGATTTAAGTAA | 1125 | 0.4133 | MSPTRELAIQISDQIKVLGSEIGVKCAVLVGGTDIVQQSIEIAKRPHIIVGTPGQVLDHLKETKGFSLGRLKFLVLDEADRLLNEDFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPVKVEVSSKYSTVDTLKEHCCFVPAKHKNCYLVYILIEMTGSTAMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRLEALEQFKSGECKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEELMGGKKVPLYTAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRRGEGDLSEDEEDTDKYLGLLSSKINKSAKRKKTMAGTGKIDNKRRFK* | 375 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g2344 | 374 | CDD | SF2_C_DEAD | 141 | 270 | - | - | |
Tpr7g2344 | 374 | MobiDBLite | consensus disorder prediction | 353 | 374 | - | - | |
Tpr7g2344 | 374 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 156 | 301 | IPR001650 | - | |
Tpr7g2344 | 374 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 129 | IPR014001 | - | |
Tpr7g2344 | 374 | Coils | Coil | 293 | 324 | - | - | |
Tpr7g2344 | 374 | MobiDBLite | consensus disorder prediction | 313 | 333 | - | - | |
Tpr7g2344 | 374 | Pfam | DEAD/DEAH box helicase | 1 | 118 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr7g2344 | 374 | PANTHER | RNA HELICASE | 1 | 344 | - | - | |
Tpr7g2344 | 374 | MobiDBLite | consensus disorder prediction | 313 | 340 | - | - | |
Tpr7g2344 | 374 | SMART | helicmild6 | 180 | 261 | IPR001650 | - | |
Tpr7g2344 | 374 | Gene3D | - | 1 | 139 | IPR027417 | - | |
Tpr7g2344 | 374 | Gene3D | - | 140 | 371 | IPR027417 | - | |
Tpr7g2344 | 374 | PANTHER | BNAC02G41920D PROTEIN | 1 | 344 | - | - | |
Tpr7g2344 | 374 | SMART | ultradead3 | 1 | 144 | IPR014001 | - | |
Tpr7g2344 | 374 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 75 | 83 | IPR000629 | - | |
Tpr7g2344 | 374 | Pfam | Helicase conserved C-terminal domain | 156 | 261 | IPR001650 | - | |
Tpr7g2344 | 374 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 282 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g2344 | Tpr-Chr7 | 30425914 | 30430634 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g2344 | 1 | 271 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 34.559 | 2.03e-50 | 172 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g2344 | K14777 | - | gmx:100775796 | 518.464 |