Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2344 ATGTCTCCCACAAGGGAGCTTGCCATTCAGATTTCTGACCAGATTAAAGTTCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTGACATTGTACAACAATCCATTGAGATAGCAAAGCGACCTCATATTATTGTTGGGACGCCTGGGCAAGTCTTGGATCACCTAAAAGAAACCAAAGGATTTTCTCTTGGTAGATTAAAATTCTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCAGCTACGATGACAAAGAAGGTCCGTAAGATCCAAAGGATGTGTTTAAGGGATCCTGTGAAGGTTGAAGTATCATCCAAGTACTCTACTGTGGACACACTGAAGGAGCATTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTCGTATACATTCTCATTGAAATGACTGGAAGTACGGCAATGGTATTCACTCGGACTTGTGATTCATCGCGGCTTCTGGCTTCAATTCTTACGAAACTTGGTTTGAAAGCCATCGCAATTAATGGTAATATGAGTCAGTCAAAGAGACTCGAAGCCTTGGAACAGTTCAAGTCTGGGGAGTGCAAAATTCTCCTTTGTACTGACGTACTTAGTAGAGGACTGGATATTCCAGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTGGGAAGGACTGCTCGTGCTGGGCGTTCCGGTGTTGCCATTTCTCTTTTGAACCAGTATGAAGTGGGGTGGTTCAAAAAGATAGAAGAACTTATGGGAGGCAAGAAGGTACCATTGTATACTGCACAAGAAGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAAGCCAAAAGATCAGCAGAAAAGGAAATTAAGGAATCCTATGAGAAGAAGAAAAGGAGGGGAGAAGGAGATTTAAGTGAGGATGAGGAGGATACTGACAAGTACTTAGGTCTCCTTTCATCAAAAATAAATAAGTCAGCAAAAAGAAAAAAGACAATGGCCGGCACCGGTAAGATAGATAACAAAAGGAGATTTAAGTAA 1125 0.4133 MSPTRELAIQISDQIKVLGSEIGVKCAVLVGGTDIVQQSIEIAKRPHIIVGTPGQVLDHLKETKGFSLGRLKFLVLDEADRLLNEDFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPVKVEVSSKYSTVDTLKEHCCFVPAKHKNCYLVYILIEMTGSTAMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRLEALEQFKSGECKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEELMGGKKVPLYTAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRRGEGDLSEDEEDTDKYLGLLSSKINKSAKRKKTMAGTGKIDNKRRFK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2344 374 CDD SF2_C_DEAD 141 270 - -
Tpr7g2344 374 MobiDBLite consensus disorder prediction 353 374 - -
Tpr7g2344 374 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 156 301 IPR001650 -
Tpr7g2344 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 129 IPR014001 -
Tpr7g2344 374 Coils Coil 293 324 - -
Tpr7g2344 374 MobiDBLite consensus disorder prediction 313 333 - -
Tpr7g2344 374 Pfam DEAD/DEAH box helicase 1 118 IPR011545 GO:0003676|GO:0005524
Tpr7g2344 374 PANTHER RNA HELICASE 1 344 - -
Tpr7g2344 374 MobiDBLite consensus disorder prediction 313 340 - -
Tpr7g2344 374 SMART helicmild6 180 261 IPR001650 -
Tpr7g2344 374 Gene3D - 1 139 IPR027417 -
Tpr7g2344 374 Gene3D - 140 371 IPR027417 -
Tpr7g2344 374 PANTHER BNAC02G41920D PROTEIN 1 344 - -
Tpr7g2344 374 SMART ultradead3 1 144 IPR014001 -
Tpr7g2344 374 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 75 83 IPR000629 -
Tpr7g2344 374 Pfam Helicase conserved C-terminal domain 156 261 IPR001650 -
Tpr7g2344 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 282 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2344 Tpr-Chr7 30425914 30430634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2344 1 271 Eukaryotic Initiation Factors Gene Family AT1G72730 34.559 2.03e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2344 K14777 - gmx:100775796 518.464