LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g2301	ATGATGAACAATAACAATAGAGCGAGATATCCACCACCTGGGATTGGTCCTGGACGTGGTGGTTCGAATCCCAACGTGAATCTGAACCAAAACCCAAACCAGAGCCCTAATTTGAACCATCAGTTTCAGCAAAGAGCACCTTATAATCACCATAACCAGCAACAACAGAACCAACAACAACAGAATCAGTTCCAGCAGCAGCAGCAACAATTCTATGCGCAGAGACAAAGGCAGCAGCAACAGCAGCAGCAACAACAACAACAACAACAACAGTGGCTGAGAAGGGCGCAGTTGGGTGGTTCAGAATCGAACGCTGTTGCCGATGAAGTCGAGAAGACCGTGCAATCGGAAGCCATTGACTCAAGTTCTCAAGACTGGAAGGCAAGACTAAAGATTCCGCCAGCTGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCTATCCAAGAAGAAAGCATTCCAATTGCTCTCACCGGCAGTGACATTCTTGCCAGGGCAAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATCTGAAAATCCAAGTTATGGTTACAACAGGCGGTACCAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATCTACTGGTTGGAACCCCAGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGCGTTCTTAAGGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTGCTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCAATTATCTTTTGCAATTCAGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTCGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA	1575	0.4171	MMNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQSPNLNHQFQQRAPYNHHNQQQQNQQQQNQFQQQQQQFYAQRQRQQQQQQQQQQQQQQWLRRAQLGGSESNAVADEVEKTVQSEAIDSSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR*	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g2301	524	SMART	ultradead3	169	365	IPR014001	-
	Tpr7g2301	524	CDD	SF2_C_DEAD	362	491	-	-
	Tpr7g2301	524	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	181	351	IPR014001	-
	Tpr7g2301	524	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	297	305	IPR000629	-
	Tpr7g2301	524	Pfam	DEAD/DEAH box helicase	175	339	IPR011545	GO:0003676\|GO:0005524
	Tpr7g2301	524	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	220	504	IPR027417	-
	Tpr7g2301	524	SMART	helicmild6	401	482	IPR001650	-
	Tpr7g2301	524	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	361	521	IPR001650	-
	Tpr7g2301	524	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	6	524	-	-
	Tpr7g2301	524	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 12	6	524	-	-
	Tpr7g2301	524	Gene3D	-	108	354	IPR027417	-
	Tpr7g2301	524	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	150	178	IPR014014	GO:0003724
	Tpr7g2301	524	MobiDBLite	consensus disorder prediction	94	125	-	-
	Tpr7g2301	524	Pfam	Helicase conserved C-terminal domain	376	482	IPR001650	-
	Tpr7g2301	524	MobiDBLite	consensus disorder prediction	48	70	-	-
	Tpr7g2301	524	CDD	DEADc_DDX6	152	352	-	-
	Tpr7g2301	524	Coils	Coil	50	70	-	-
	Tpr7g2301	524	Gene3D	-	355	523	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g2301	Tpr-Chr7	29944522	29955313	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g2301	150	517	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.649	1.68e-94	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g2301	K12614		-	fve:101307921	855.129