Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2290 ATGGGTGCTCCGAAGCAGAAATGGTCAGCAGAAGAGGAAGCGGCGCTTAAGGCTGGAGTTGTCAAGCATGGGGATAAATGGAGAAATTTAAGTGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTATCAATCAGAAGGGCGCATCATCAGGGATCAAGACATGATGACAACCCTATGGCTGTCACTCCTGTTACTCCAAGTGATGATGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGAGATATGCAAATTCCTGGTCCAAGAGGGCCTATTGTAAGATTGGATAACCTTATCATGGACGCTATATCTTGCTTGAATGAGCATGGTGGTTCTAATAAAACAACTATTGCTGCTTTCATAGAGGATCAATACTATGCACCGGAAGACTTCAAAAAGATGTTGTCTGCAAAACTGAAATATCTTACATCTAGGGGAAAACTGATCAAGGTGAAACGTAGGTATAGGATTGCACCTACCCCAGCATATTCAGACAGAGGAAGACGCTCTCCCATGTCATTATTGGAAGGGAGGCAGAGAGGCTCTTTCAGATTTGACATGAGTCGGATCAATATGCCTACACAGTCTGAGATAGATATAGAGTTAGAAAAGATAAGGTCCATGTCCGCCGAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTCGCTGCAGCAGAAGCTGCCTTAGCGGAAGCTGAAGAAGCAGTGCTGGAGGCAGAGGCTGCAGAAGCAGAAGCAGATGCAGCGGAAGCTTTTGCAGAAGCTGCAAGGAAAACAGAGAAGGAGACAAAATCCCTAAAGATGGTGCACCCTGCTTGA 825 0.457 MGAPKQKWSAEEEAALKAGVVKHGDKWRNLSVMANGWTSREKAKVSIRRAHHQGSRHDDNPMAVTPVTPSDDEIVDVKPLQVSRDMQIPGPRGPIVRLDNLIMDAISCLNEHGGSNKTTIAAFIEDQYYAPEDFKKMLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRRSPMSLLEGRQRGSFRFDMSRINMPTQSEIDIELEKIRSMSAEEAAAVAARAVAAAEAALAEAEEAVLEAEAAEAEADAAEAFAEAARKTEKETKSLKMVHPA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2290 274 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 94 162 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g2290 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 29 IPR017930 -
Tpr7g2290 274 PANTHER SINGLE MYB HISTONE 4 1 24 IPR044597 GO:0003691
Tpr7g2290 274 PANTHER SINGLE MYB HISTONE 4 25 270 IPR044597 GO:0003691
Tpr7g2290 274 Gene3D - 2 52 - -
Tpr7g2290 274 Coils Coil 217 263 - -
Tpr7g2290 274 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 25 270 - -
Tpr7g2290 274 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 24 - -
Tpr7g2290 274 SMART h15plus2 90 157 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g2290 274 Coils Coil 274 274 - -
Tpr7g2290 274 MobiDBLite consensus disorder prediction 255 274 - -
Tpr7g2290 274 SUPERFAMILY "Winged helix" DNA-binding domain 95 171 IPR036390 -
Tpr7g2290 274 Pfam linker histone H1 and H5 family 99 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr7g2290 274 Gene3D - 96 169 IPR036388 -
Tpr7g2290 274 SUPERFAMILY Homeodomain-like 2 38 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2290 Tpr-Chr7 29820144 29827997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2290 1 213 Single Myb Histone (SMH) Gene Family AT1G49950 47.541 1.60e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2290 K09422 - gmx:778173 277.715