Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2273 ATGGATCGAGGCGACCAAATGGCTGCATTATCGGGTTCTGCATCGTACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAGTCCGCCCGGTATTCGTCAACTACCGAATACCAATTCACCATTTCAATCAAGTATTGGTGGTACTATTGGATCCACATTGCCGATGGATTCTTCCGGAATTTCATCCCAATGTATCAATGTCGGTGCTCCTTCTGCGGCTGCTTCAACTGGTGAACCTGTCAAAAGGAAGCGAGGAAGGCCTAGAAAGTATGGGGCTGACGGAAATGTTTCGTTGGCGTTGACTCCAACAACACCAGCAAGTCAACCTGGATCTGTACCGCAAGTACAGAAACGCGGTCGCGGTCGCCCTCCAGGTTCAGGGAAGAAACAGCAGTTGGCTTCTGTTGCTGGTTTGATCTCAAGTTCAGCTGGGAATGGTTTCACCCCACATGTGATCAATGTCGCAATTGGAGAGGACATTGCGACAAAAATTCTGGCATTTTCTCAGGAGGGACCTAGAGCTATATTTGTTATGTCAGCCACTGGTGCTGTCTCTACTGTGACGCTTTGTCAAGCTTCGACATCTGGGGGATCTGTCACATATGAGGGGCGTTTCGAGATACTTAGCTTGTCAGGCTCTTACTTGGTTGCTGATAATGGTAGCTCCCGAAATCGAACTGGTTCATTAAGTGTTTGTCTTGCAAGTCCTGATGGCCGTGTCATTGGTGGAGGCGTCGGCGGACTACTCATTGCTGCAAGTTCTGTTCAGGTGATACTTGGGAGCTTTATGTGGGGCGGACAAAAGACAAAGAAACAGAAGATTGAAGATTCGGAAGGTCAAGAAGTTGGTATAGAGGCAGATCATCATCAGCATCATCAGCATGGAGGTCATAATCCAGTTGCAATGAACAACATTTCTTCACCAAATCAAAATCTTACTCCATCATCTCTCAATTCTTGGCCTGCATCGCGTTCCTTGGATATGCGTAATTCGCATATTGACATTGATTTAATGCGCGGGTGA 1041 0.4688 MDRGDQMAALSGSASYFMQRGLPGSGNQHELHSPPGIRQLPNTNSPFQSSIGGTIGSTLPMDSSGISSQCINVGAPSAAASTGEPVKRKRGRPRKYGADGNVSLALTPTTPASQPGSVPQVQKRGRGRPPGSGKKQQLASVAGLISSSAGNGFTPHVINVAIGEDIATKILAFSQEGPRAIFVMSATGAVSTVTLCQASTSGGSVTYEGRFEILSLSGSYLVADNGSSRNRTGSLSVCLASPDGRVIGGGVGGLLIAASSVQVILGSFMWGGQKTKKQKIEDSEGQEVGIEADHHQHHQHGGHNPVAMNNISSPNQNLTPSSLNSWPASRSLDMRNSHIDIDLMRG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2273 346 ProSiteProfiles PPC domain profile profile. 150 289 IPR005175 -
Tpr7g2273 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Tpr7g2273 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 320 - -
Tpr7g2273 346 CDD DUF296 154 245 IPR005175 -
Tpr7g2273 346 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Tpr7g2273 346 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Tpr7g2273 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 270 - -
Tpr7g2273 346 MobiDBLite consensus disorder prediction 103 120 - -
Tpr7g2273 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 320 IPR039605 GO:0003680
Tpr7g2273 346 MobiDBLite consensus disorder prediction 75 138 - -
Tpr7g2273 346 Gene3D - 155 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2273 Tpr-Chr7 29568165 29573753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2273 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.311 5.15e-85 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2273 - - gmx:100799791 456.062