LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g2266	ATGATGAACAATAACAATAGAGCGAGATATCCACCACCTGGGATTGGTCCTGGACGTGGTGGTTCGAATCCCAACGTGAATCTGAACCAAAACCCAAACCAGAGCCCTAATTTGAACCATCAGTTTCAGCAAAGAGCACCTTATAATCACCATAACCAGCAACAACAGAACCAACAACAACAGAATCAGTTCCAGCAGCAGCAGCAACAATTCTATGCGCAGAGACAAAGGCAGCAGCAACAGCAGCAGCAGCAACAACAACAACAACAACAACAGTGGCTGAGAAGGGCGCAGTTGGGTGGTTCAGAATCGAATGCTGTTGCCGATGAAGTCGAGAAGACCGTGCAATCGGAAGCCATTGACTCGAGTTCTCAAGACTGGAAGGCAAGACTAAAGATTCCGCCAGCTGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCTATCCAAGAAGAAAGCATTCCAATTGCTCTCACCGGCAGTGACATTCTTGCCAGGGCAAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAACATCTGAAAATCCAAGTTATGGTTACAACAGGCGGTACCAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATCTACTGGTTGGAACCCCAGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGCGTTCTTAAGGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTGCTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCGAAGCTGCAAATAAACCAGTCAATTATCTTTTGCAATTCAGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTCGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA	1578	0.4176	MMNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQSPNLNHQFQQRAPYNHHNQQQQNQQQQNQFQQQQQQFYAQRQRQQQQQQQQQQQQQQQWLRRAQLGGSESNAVADEVEKTVQSEAIDSSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR*	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g2266	525	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	362	522	IPR001650	-
	Tpr7g2266	525	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	6	525	-	-
	Tpr7g2266	525	Gene3D	-	107	355	IPR027417	-
	Tpr7g2266	525	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 12	6	525	-	-
	Tpr7g2266	525	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	151	179	IPR014014	GO:0003724
	Tpr7g2266	525	MobiDBLite	consensus disorder prediction	95	126	-	-
	Tpr7g2266	525	Pfam	DEAD/DEAH box helicase	176	340	IPR011545	GO:0003676\|GO:0005524
	Tpr7g2266	525	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	221	505	IPR027417	-
	Tpr7g2266	525	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	182	352	IPR014001	-
	Tpr7g2266	525	Gene3D	-	356	524	IPR027417	-
	Tpr7g2266	525	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	298	306	IPR000629	-
	Tpr7g2266	525	MobiDBLite	consensus disorder prediction	48	70	-	-
	Tpr7g2266	525	CDD	SF2_C_DEAD	363	492	-	-
	Tpr7g2266	525	SMART	helicmild6	402	483	IPR001650	-
	Tpr7g2266	525	Coils	Coil	50	70	-	-
	Tpr7g2266	525	Pfam	Helicase conserved C-terminal domain	377	483	IPR001650	-
	Tpr7g2266	525	SMART	ultradead3	170	366	IPR014001	-
	Tpr7g2266	525	CDD	DEADc_DDX6	153	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g2266	Tpr-Chr7	29493404	29504201	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g2266	151	518	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.649	1.64e-94	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g2266	K12614		-	fve:101307921	854.358