Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2254 ATGTCTTTCACCGGAACTCTTGACAAATGCAAGGCTTGTGACAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAAATATACCATATCATAAACAATGCTTCAAATGCAGTCATTGCAAGGGATGTCTTACGATGAGTACATATTCTTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTATTCAAGGAATCTGGCAATTTTAGCAAGAACTTCGCAAAGTCTTCTGACAAGCAAAATGACCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGCGGTACCCTCGACAAATGCGCGACTTGCTCTAAAACCGTCTACCCACTCGAAAAGGTGACAATGGAAGGTGAATGCTACCACAAAAATTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCACTTGATGGTGTCCTCTACTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGTAACTATAGCCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTCCACTTTCTGAAACAACACTTGAAGTTGTTGAAGAGCCTTCACAACCAGCAGAAGCTGATGAAGCACCTGAAGACCAACCAGCTGAAGAAACCTCTTGA 639 0.4194 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKQCFKCSHCKGCLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKQNDLNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTMEGECYHKNCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSPLSETTLEVVEEPSQPAEADEAPEDQPAEETS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2254 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tpr7g2254 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tpr7g2254 212 Gene3D Cysteine Rich Protein 100 168 - -
Tpr7g2254 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tpr7g2254 212 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Tpr7g2254 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Tpr7g2254 212 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Tpr7g2254 212 MobiDBLite consensus disorder prediction 194 212 - -
Tpr7g2254 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Tpr7g2254 212 SMART lim_4 9 61 IPR001781 -
Tpr7g2254 212 SMART lim_4 103 155 IPR001781 -
Tpr7g2254 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Tpr7g2254 212 Gene3D Cysteine Rich Protein 5 72 - -
Tpr7g2254 212 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Tpr7g2254 212 MobiDBLite consensus disorder prediction 175 212 - -
Tpr7g2254 212 MobiDBLite consensus disorder prediction 175 190 - -
Tpr7g2254 212 Pfam LIM domain 10 65 IPR001781 -
Tpr7g2254 212 Pfam LIM domain 104 159 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2254 Tpr-Chr7 29373542 29375362 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tpr7g2254 LIM 1.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2254 - K09377 gmx:100800234 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2254 7 29373542 29375362 Tpr7g2254 7 29373542 29375362 ECH