Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2209 ATGGTTATTGCCGATTCAAAGGGTGATCGTGTTCAAGCTATAACTCGCCATAAGGAATTTGAACATTGGAAGGATTTTGTTGTCTACAATAATGTCTATGTTTTGCATAACTGTCATGTTTATGATAATGATGCAGGTTTTAAAACCTGTGATAGTCCATACAAAGTTGTGTTTGGTTCCGGTACCAAGTTCATGAAAGATGACTCTATCACTAACATTCCTTCTCATCATTTTCGCTTCAAAAGTTTTAAGGAAGTTCAGGATGGAAAGTTTAAAATCAATCTTTTGTATGAGATCATTGGCGTTCTTCATGAAGTTGTCAAAACTCAGACCGCAACTTCTGGAAGAAAACCTTGCACAAATTTAATCTTGGCTAATGAAAGTGGAGACATGGTTGATGTTACTTTGTGGGAAGCTTTTTCTACTCAATTACAAAACTTCATTTCTGGTCGCAAAGAAAAGGGTCCAATCTTTTTAATCCTAACACATGCTCAGTGTAAACTAGGAGATAATGGGAGGCCAACCTTTTGTAACAATTGGTCAGGATCACAGCTTTTAATCAATCATAACCACCCAGATGTTGCCAACTTTAAGTCTTTATTTAAAGACATTGAAAACTCTCAAGCTGCTACTCAAGACTTTACTCAGGTTTCGTCTTCATCTCAATTAGGCAAAGATGACCACTTCTCAAATATGTCTCAGGTCAAAACTATTGCTCAAATGAAACTCTCTCAAAAGGACTCATATTGCATTACTGTTGGAACAACCAAAAAATTCAATCCTAATCAATTTGGTTGGTACTATGAGAGTTGTTCCAAATGCACAAAGTCCTCAAGGTCTATGGGTGAGAATTATACATGCTCATGTGGTGAAAATGTCAAAGTTCCAATTGCTAGGTACAAAGTTGTTATTCAAGTTGAATCCGAAGGACATAAGGCTGATTTTGTTTTTTGGGATAGTGAATGTCATAGTATTATTGGTACAACTGCTGAAGAACTAAGGGAGAAAATGAAGAAGGTTGGTGAGGACGATCCCAAAATCTATCCTATTGATCTTGACAAGCTACTGAACTTAGAGTTTGCATATAAAGTCAAGTACCAAAGTTATTATCGTCAAGCTTCCATTAATCAGATGACCAATGATCCAACACTTATTGCTAACATCAAGCTTCACATGAATTTAAAACATCCTTCACAATCTGTTGAAATTGAACTCAAAGATGGAACTAATGCTCAAAAGGAGAACACTGAATGCTCTGATTCTTTGGTATTTGCTTCGCAATCTCTTTCGGCTTGCGGAGACAATGAATTTGACATTACTTCAAACTCTACACCTGCTAAGCGTCTTTCTGCAGCAATTCAAGTTGACGACATTCCATCTCCGCCTTTAACAACAACTAAGCGTTCATCCACAAAGAACGCCAAGCATGTCAAACTTGAATGA 1443 0.3687 MVIADSKGDRVQAITRHKEFEHWKDFVVYNNVYVLHNCHVYDNDAGFKTCDSPYKVVFGSGTKFMKDDSITNIPSHHFRFKSFKEVQDGKFKINLLYEIIGVLHEVVKTQTATSGRKPCTNLILANESGDMVDVTLWEAFSTQLQNFISGRKEKGPIFLILTHAQCKLGDNGRPTFCNNWSGSQLLINHNHPDVANFKSLFKDIENSQAATQDFTQVSSSSQLGKDDHFSNMSQVKTIAQMKLSQKDSYCITVGTTKKFNPNQFGWYYESCSKCTKSSRSMGENYTCSCGENVKVPIARYKVVIQVESEGHKADFVFWDSECHSIIGTTAEELREKMKKVGEDDPKIYPIDLDKLLNLEFAYKVKYQSYYRQASINQMTNDPTLIANIKLHMNLKHPSQSVEIELKDGTNAQKENTECSDSLVFASQSLSACGDNEFDITSNSTPAKRLSAAIQVDDIPSPPLTTTKRSSTKNAKHVKLE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2209 480 MobiDBLite consensus disorder prediction 451 480 - -
Tpr7g2209 480 Gene3D - 1 66 IPR012340 -
Tpr7g2209 480 Gene3D - 217 391 IPR012340 -
Tpr7g2209 480 PANTHER REPLICATION FACTOR A 1, RFA1 21 337 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g2209 480 SUPERFAMILY Nucleic acid-binding proteins 1 73 IPR012340 -
Tpr7g2209 480 SUPERFAMILY Nucleic acid-binding proteins 78 202 IPR012340 -
Tpr7g2209 480 SUPERFAMILY Nucleic acid-binding proteins 235 370 IPR012340 -
Tpr7g2209 480 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 21 337 - -
Tpr7g2209 480 Gene3D - 71 216 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2209 Tpr-Chr7 28797421 28799840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2209 3 342 Core DNA Replication Machinery Family AT5G08020 22.535 8.94e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2209 - - mtr:MTR_6g464080 478.404