Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2195 ATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACTGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATAGTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACGAGTTGTCGGAGAAGTTTCTCAGACTTCATCACATATTTCATCGACAGAAGTTGTCGAAGAAGTTTCTCAGAGTTCATCACATTCTTTATCGACAGAAGTTGTCGAAGAAGTTTCTCAGAGTTCATCACATTCTTTATCGACAGAAGTTGTCGAAACTGCTGATAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCGTCAGCTATTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCATGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGGCACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACGAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGCCATACTGCTGAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCGAGGGCCATTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTGTTGGCAAAGATACACTATTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGCAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTAACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAATGTAAAATGACACTCAATGGGCATACTGACACAGTCACGTCGCTTATTAGTTGGGGCAACTTCTTACTATCAAGTTCATTGGACTGCACTGTTAAGGTCTGGGCTGAAAGTGAAGAGAAAACTTTCCATGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCAAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGACTATTTGCTCGACAAGAAGTTAGATCAATCGAGAAAGGTCCTGGTGGACTCATCTTCACTGGAGATGCAACTGGTTTGGTGACTGTCTCAAAATGGTCGGAAGAAGCCAAAGTAGAAGCAGCATAG 1512 0.4253 MVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESESEENSLTKRAATVWIRNSGDCISKTPLVEPSQTSSPTISTRVVGEVSQTSSHISSTEVVEEVSQSSSHSLSTEVVEEVSQSSSHSLSTEVVETADSSSPILSTAVVEVSQSSSAILSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAECANVTNLGDEVNSLISEGHWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTVGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLISWGNFLLSSSLDCTVKVWAESEEKTFHVAYSHNVENGIVALNAMTDAEDKTILFCSCQDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDATGLVTVSKWSEEAKVEAA* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2195 503 ProSitePatterns Trp-Asp (WD) repeats signature. 353 367 IPR019775 -
Tpr7g2195 503 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
Tpr7g2195 503 SUPERFAMILY CCCH zinc finger 175 197 IPR036855 GO:0046872
Tpr7g2195 503 SMART WD40_4 282 319 IPR001680 GO:0005515
Tpr7g2195 503 SMART WD40_4 203 242 IPR001680 GO:0005515
Tpr7g2195 503 SMART WD40_4 409 453 IPR001680 GO:0005515
Tpr7g2195 503 SMART WD40_4 327 366 IPR001680 GO:0005515
Tpr7g2195 503 SMART WD40_4 369 406 IPR001680 GO:0005515
Tpr7g2195 503 Pfam WD domain, G-beta repeat 371 405 IPR001680 GO:0005515
Tpr7g2195 503 Pfam WD domain, G-beta repeat 207 242 IPR001680 GO:0005515
Tpr7g2195 503 Pfam WD domain, G-beta repeat 329 366 IPR001680 GO:0005515
Tpr7g2195 503 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Tpr7g2195 503 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Tpr7g2195 503 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Tpr7g2195 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 369 - -
Tpr7g2195 503 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Tpr7g2195 503 SMART c3hfinal6 172 198 IPR000571 GO:0046872
Tpr7g2195 503 PANTHER - 10 501 IPR044715 -
Tpr7g2195 503 MobiDBLite consensus disorder prediction 110 148 - -
Tpr7g2195 503 ProSiteProfiles Zinc finger C3H1-type profile. 172 199 IPR000571 GO:0046872
Tpr7g2195 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Tpr7g2195 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 375 IPR001680 GO:0005515
Tpr7g2195 503 Gene3D - 189 327 IPR015943 GO:0005515
Tpr7g2195 503 Gene3D - 328 502 IPR015943 GO:0005515
Tpr7g2195 503 SUPERFAMILY WD40 repeat-like 200 489 IPR036322 GO:0005515
Tpr7g2195 503 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 10 501 - -
Tpr7g2195 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 242 - -
Tpr7g2195 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 415 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2195 Tpr-Chr7 28615587 28618466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2195 210 453 Acyl Lipid Metabolism Gene Families AT3G18860 24.812 7.33e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g2195 WD40 1.2e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2195 - - mtr:MTR_8g028700 502.671