Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2188 ATGGTGGAAGAAGGTAGAGTTGCTATTACAGTTGACACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTTGTTCCTCTTGCTCTTACAAAAGCAAAAGAGGTAAAAGGGTTTCTTGTTAGATGGAAAATGATCATTTCAAAATTGGAACAAGTTCCATCAAAGTTATCCGATTTATCGAGCCACCCTTGTTTTTCAAAGAATGCTCTTTGCAAAGAACAATTGCAAGCGGTATCAAAGACACTAAGAGAAGCTATTGAATTAGCTGAGTTATGTTTGAAGGAAAAGTATGAAGGTAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGAAAGCTTGATTTGAATTTAAAGGATTGTAGTTTGTTAACGAAAACCGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGGTTTTTTAGCAGAAGAAGATATTGAAACACATGGCAATATAAAGGAACTACTTGCACGTCTTCAAATCGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGATTACATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGTTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTTACAGCAACATCAACAAGGATTAGGGAGAAAACAGTTAGTATCATATGTTCTCTTGTTGAATCAGGTGGTAGCTTCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCTCTTATAAGACTAGTCGAATCAGGTAGTACTTTTGGTAAAGAAAAGGCTATTGTTTCTCTTCAGAGGCTGACGATGTCGGAGGAAACAACTCGTGCTATTGTTGGACATGGAGGGGTTCCTCCGTTAATCGAGCTTTGTCAGTTTGGTGATTCTGTTTCACAATCTGCAGCAGCTTGTACTTTGAAGAATATCTCGGCTGTTCCGGAAGTGAGAAATGTTTTGGCTGAAGAAGGTGTTGTTAAGGTTATGATCAATCTACTCAGCAATGGAATTTTGTTAGGTACTAAAGAGTATGCTGCTGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAGAAAATCGGTTATATCAGAAGGCGGTGTGCAGAGTCTTTTATCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGTGCATTGAGGAATCTCGTCGGATCGGTTCCCGAGGAAACATTGGTTTCTGTCGGAATACTTCCTTGCTTAGTTCATGTGTTGAAGTCAGGATCGTTAGGTGCGAAACAAGGCGCAGTGTCGGTTATATGCAAAATTTGCAGCACAATTGAGATGAAGAAAATGTTAGGTGAAGTTGGTTGCATACCTCTATTGATCAACATGCTTGAGGCTAAAGCAAATACTGCTAAAGAACTTGCAGCACAAGCAATTGCAAGCTTGATGATTTTGTCTGAGAATCGAAGAGAAGTTAAGAAAGACGATAAAAGTGTGCCGAATTTGGTTCAATTGCTTGATCCAAGTCAACAAAATACTGCAAAGAAATATGCAGTTTGTTGTCTTGCATCACTTTCTTCATCTAAGAAATCCAAGAAGTTGATGATTTCATATGGAGCAATAGGGTATTTGAAAAAGCTTATTGAGATGGAGATTCCAGGTGCTAAAAAGTTGCTTGAGAGATTGGAAAGAGGGAAACTCAGAAGCTTGTTTAGCAGAAAATAG 1686 0.3832 MVEEGRVAITVDTCSTEEWLLNSQELVPLALTKAKEVKGFLVRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSGFLAEEDIETHGNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAVFCRSNVAALVQLLTATSTRIREKTVSIICSLVESGGSFENWLVSEGVLPPLIRLVESGSTFGKEKAIVSLQRLTMSEETTRAIVGHGGVPPLIELCQFGDSVSQSAAACTLKNISAVPEVRNVLAEEGVVKVMINLLSNGILLGTKEYAAECLQNLTASNESLRKSVISEGGVQSLLSYLDGPLPQESAVGALRNLVGSVPEETLVSVGILPCLVHVLKSGSLGAKQGAVSVICKICSTIEMKKMLGEVGCIPLLINMLEAKANTAKELAAQAIASLMILSENRREVKKDDKSVPNLVQLLDPSQQNTAKKYAVCCLASLSSSKKSKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2188 561 SMART arm_5 268 308 IPR000225 GO:0005515
Tpr7g2188 561 SMART arm_5 309 350 IPR000225 GO:0005515
Tpr7g2188 561 SMART arm_5 391 430 IPR000225 GO:0005515
Tpr7g2188 561 SMART arm_5 185 225 IPR000225 GO:0005515
Tpr7g2188 561 SMART arm_5 431 471 IPR000225 GO:0005515
Tpr7g2188 561 SMART arm_5 351 390 IPR000225 GO:0005515
Tpr7g2188 561 SMART arm_5 472 514 IPR000225 GO:0005515
Tpr7g2188 561 SUPERFAMILY ARM repeat 153 540 IPR016024 -
Tpr7g2188 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Tpr7g2188 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 364 IPR000225 GO:0005515
Tpr7g2188 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
Tpr7g2188 561 Gene3D - 148 393 IPR011989 -
Tpr7g2188 561 Gene3D - 394 543 IPR011989 -
Tpr7g2188 561 Pfam Armadillo/beta-catenin-like repeat 269 308 IPR000225 GO:0005515
Tpr7g2188 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2188 Tpr-Chr7 28550332 28554262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2188 401 539 U-box Gene Family AT3G54790 27.338 7.78e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2188 - - gmx:100798922 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2188 7 28550332 28554262 Tpr7g2188 7 28550332 28554262 ECH