Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2187 ATGAAGCCTATCTTTTGCGGAAATCTGGATTTCGACGCAAGACAATCTGATGTTGAGAGGCTTTTCAGAAAATACGGGAAGATTGATAGAGTGGACTTGAAGTCCGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGACGACTTGATCAAACTGAATTTGGTAGAAAGGGGCGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGCGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCAAAGACTTTGTTTATTATTAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACCAAAGCATTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTTGAGTATGCTATAAGAGATGACGATGTCAAAAAGGATGGGTACAGTCCTGATAGAAGAGGTCGTGGTTCCCCTGAGGGTAGGTATGGTCGTGGCAGGTCCCCAAGTCCTTACCGCAGAGGTAGGGGTAGCCCGGATTATGGCCGTGGTTCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAGTGAATGGTAGATATGATAGGTATGATCCAAGTAATTTTGTTTTTTTGGGTAGTGCTGTATACATCACATTATATTTTTACAATACTTTCACTGTTCATGTAGCCGATCTCCACCACCTCGTAGATCAAGTCCAGCTTCCAGACCTGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAGAGCCCAAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCGCGGTCACGGTCACGATCCTGAGGCAGCTGAATAG 963 0.4455 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKKDGYSPDRRGRGSPEGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPVNGRYDRYDPSNFVFLGSAVYITLYFYNTFTVHVADLHHLVDQVQLPDLNQEEAPSMNELRAQMGDMIADLPHLVIGRGHGHDPEAAE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2187 320 SUPERFAMILY RNA-binding domain, RBD 4 169 IPR035979 GO:0003676
Tpr7g2187 320 Gene3D - 86 217 IPR012677 -
Tpr7g2187 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Tpr7g2187 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Tpr7g2187 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Tpr7g2187 320 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 213 - -
Tpr7g2187 320 MobiDBLite consensus disorder prediction 71 92 - -
Tpr7g2187 320 PANTHER - 4 213 - -
Tpr7g2187 320 Gene3D - 1 85 IPR012677 -
Tpr7g2187 320 SMART rrm1_1 97 163 IPR000504 GO:0003723
Tpr7g2187 320 SMART rrm1_1 3 70 IPR000504 GO:0003723
Tpr7g2187 320 MobiDBLite consensus disorder prediction 173 188 - -
Tpr7g2187 320 MobiDBLite consensus disorder prediction 173 235 - -
Tpr7g2187 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Tpr7g2187 320 MobiDBLite consensus disorder prediction 71 86 - -
Tpr7g2187 320 MobiDBLite consensus disorder prediction 221 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2187 Tpr-Chr7 28540872 28544973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2187 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 23.784 1.51e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2187 K12893 - gmx:100797778 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2187 7 28540872 28544973 Tpr7g2187 7 28540872 28544973 ECH