Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2182 ATGATGGGTGGAGGTGGCAATTTGGTTAGTACAATAATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTATGTGCAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTGAGATCACGTACTATATATGAGATTGAATCAAGACCAGATATTGAACGGCCAGAATATCATGCTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTAAATTTCAACCAAGAAGCCTTCAGTGCCATCCAATGTACACAGTGTGTGATATGTTTAGGAGATTATAAAGAAAAAGAAGTATTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATGTGGCTAAGAAAACAATCTACATGTCCTGTATGTCGTTTGACATTGCATAATGTTTGTGAAGAAAAACATGTGAGACCTGTCACATTCACCATAATACAATCTCTCAATGAGTCTAATACTCCACAAGGGAACAGTGATAATGAGAGACAAGTTGAAGTTAATGCAAGAGAAACAGAATCAGGGTTGTGA 546 0.3663 MMGGGGNLVSTIIGFGMSATFIVFVCARIICGRFRERHVRSRTIYEIESRPDIERPEYHANEPEPAFVAAIPTLNFNQEAFSAIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDMWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIIQSLNESNTPQGNSDNERQVEVNARETESGL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2182 181 Pfam Ring finger domain 88 131 IPR001841 -
Tpr7g2182 181 CDD RING-H2_EL5_like 88 131 - -
Tpr7g2182 181 SUPERFAMILY RING/U-box 88 137 - -
Tpr7g2182 181 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Tpr7g2182 181 PANTHER OS11G0150450 PROTEIN 1 172 - -
Tpr7g2182 181 PANTHER OS02G0676500 PROTEIN 1 172 - -
Tpr7g2182 181 SMART ring_2 89 130 IPR001841 -
Tpr7g2182 181 MobiDBLite consensus disorder prediction 155 181 - -
Tpr7g2182 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2182 Tpr-Chr7 28498440 28501499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2182 78 134 C3H Transcription Factor Family AT4G10160 54.386 7.93e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2182 - - cam:101509791 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2182 7 28498440 28501499 Tpr7g2182 7 28498440 28501499 ECH