Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g2172 | ATGTCTATCACTTCCACAACTACACCCCTCTTCAAATCCCTTCTTACCATATCAGCCGAATCATCAACTCGCCTCTTCTCTTCCCCCTCCTCCCTCGTCTACCCCAAAACCAAACCTACCTTCTTCAAACTTCATTTCTCCCTCAAAACTAATCGCTCTCTCCCTCATCCCTTATTCGTCGCTCAAGAAGGCGAAACCCTAACAACTTCACCAGAGGAAGCCGCACTTCTCGATGGTGATGATGAAGAAGATTCTTCTGAAGGAGATTTCGTTGAACCACCCGAAGATGCTAAATTGTTTGTTGGAAATTTGCCTTATACTGTTGGTAGTGAGAAATTAGCCATGCTTTTTGGACAGGCTGGTACCGTCGAGATTGCTGAGGTTATTTATAATAGGGATACTGACCAGAGTCGTGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCTGAGTCTGCTGTCCAGAAGTTTAACCGCTATGATTATGATGGAAGATCGTTGACTGTTAACGTAGCTTCTCCAAGAGGATCTCGGCCTGAGCGTATTGAGCGTCAACCTCGTACTTTTGAACCTGTCATAAGAGTTTATGTTAGTAACTTGGCATGGGAAGTTGATGATGCTAAGCTTGAACAAATTTTCAGTGAACATGGTAAGGTTGTCAGTGCTCGAGTAATCTATGATAGGGAGACTGGTAGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAAACGGAAATGAATGATGCCATCGCTGCTCTTGATGGTCAGAGTTTGGATGGCAGGACAATAAGAGTGAGTGTTGCTCAAGTCAGGCCCAGGCGTAACTCTTTTTGA | 840 | 0.4429 | MSITSTTTPLFKSLLTISAESSTRLFSSPSSLVYPKTKPTFFKLHFSLKTNRSLPHPLFVAQEGETLTTSPEEAALLDGDDEEDSSEGDFVEPPEDAKLFVGNLPYTVGSEKLAMLFGQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAESAVQKFNRYDYDGRSLTVNVASPRGSRPERIERQPRTFEPVIRVYVSNLAWEVDDAKLEQIFSEHGKVVSARVIYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVSVAQVRPRRNSF* | 280 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g2172 | 279 | PANTHER | OS02G0815200 PROTEIN | 76 | 279 | - | - | |
Tpr7g2172 | 279 | PANTHER | RIBONUCLEOPROTEIN | 76 | 279 | - | - | |
Tpr7g2172 | 279 | CDD | RRM_HP0827_like | 98 | 175 | - | - | |
Tpr7g2172 | 279 | CDD | RRM_HP0827_like | 195 | 271 | - | - | |
Tpr7g2172 | 279 | SUPERFAMILY | RNA-binding domain, RBD | 188 | 276 | IPR035979 | GO:0003676 | |
Tpr7g2172 | 279 | SMART | rrm1_1 | 98 | 171 | IPR000504 | GO:0003723 | |
Tpr7g2172 | 279 | SMART | rrm1_1 | 195 | 268 | IPR000504 | GO:0003723 | |
Tpr7g2172 | 279 | Gene3D | - | 181 | 278 | IPR012677 | - | |
Tpr7g2172 | 279 | Gene3D | - | 61 | 180 | IPR012677 | - | |
Tpr7g2172 | 279 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 168 | IPR000504 | GO:0003723 | |
Tpr7g2172 | 279 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 196 | 266 | IPR000504 | GO:0003723 | |
Tpr7g2172 | 279 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 194 | 272 | IPR000504 | GO:0003723 | |
Tpr7g2172 | 279 | SUPERFAMILY | RNA-binding domain, RBD | 93 | 186 | IPR035979 | GO:0003676 | |
Tpr7g2172 | 279 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 175 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g2172 | Tpr-Chr7 | 28385132 | 28387429 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g2172 | 94 | 278 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 33.854 | 4.24e-23 | 97.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g2172 | - | - | gmx:100790280 | 314.309 |