Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2172 ATGTCTATCACTTCCACAACTACACCCCTCTTCAAATCCCTTCTTACCATATCAGCCGAATCATCAACTCGCCTCTTCTCTTCCCCCTCCTCCCTCGTCTACCCCAAAACCAAACCTACCTTCTTCAAACTTCATTTCTCCCTCAAAACTAATCGCTCTCTCCCTCATCCCTTATTCGTCGCTCAAGAAGGCGAAACCCTAACAACTTCACCAGAGGAAGCCGCACTTCTCGATGGTGATGATGAAGAAGATTCTTCTGAAGGAGATTTCGTTGAACCACCCGAAGATGCTAAATTGTTTGTTGGAAATTTGCCTTATACTGTTGGTAGTGAGAAATTAGCCATGCTTTTTGGACAGGCTGGTACCGTCGAGATTGCTGAGGTTATTTATAATAGGGATACTGACCAGAGTCGTGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCTGAGTCTGCTGTCCAGAAGTTTAACCGCTATGATTATGATGGAAGATCGTTGACTGTTAACGTAGCTTCTCCAAGAGGATCTCGGCCTGAGCGTATTGAGCGTCAACCTCGTACTTTTGAACCTGTCATAAGAGTTTATGTTAGTAACTTGGCATGGGAAGTTGATGATGCTAAGCTTGAACAAATTTTCAGTGAACATGGTAAGGTTGTCAGTGCTCGAGTAATCTATGATAGGGAGACTGGTAGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAAACGGAAATGAATGATGCCATCGCTGCTCTTGATGGTCAGAGTTTGGATGGCAGGACAATAAGAGTGAGTGTTGCTCAAGTCAGGCCCAGGCGTAACTCTTTTTGA 840 0.4429 MSITSTTTPLFKSLLTISAESSTRLFSSPSSLVYPKTKPTFFKLHFSLKTNRSLPHPLFVAQEGETLTTSPEEAALLDGDDEEDSSEGDFVEPPEDAKLFVGNLPYTVGSEKLAMLFGQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAESAVQKFNRYDYDGRSLTVNVASPRGSRPERIERQPRTFEPVIRVYVSNLAWEVDDAKLEQIFSEHGKVVSARVIYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRTIRVSVAQVRPRRNSF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2172 279 PANTHER OS02G0815200 PROTEIN 76 279 - -
Tpr7g2172 279 PANTHER RIBONUCLEOPROTEIN 76 279 - -
Tpr7g2172 279 CDD RRM_HP0827_like 98 175 - -
Tpr7g2172 279 CDD RRM_HP0827_like 195 271 - -
Tpr7g2172 279 SUPERFAMILY RNA-binding domain, RBD 188 276 IPR035979 GO:0003676
Tpr7g2172 279 SMART rrm1_1 98 171 IPR000504 GO:0003723
Tpr7g2172 279 SMART rrm1_1 195 268 IPR000504 GO:0003723
Tpr7g2172 279 Gene3D - 181 278 IPR012677 -
Tpr7g2172 279 Gene3D - 61 180 IPR012677 -
Tpr7g2172 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Tpr7g2172 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Tpr7g2172 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Tpr7g2172 279 SUPERFAMILY RNA-binding domain, RBD 93 186 IPR035979 GO:0003676
Tpr7g2172 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2172 Tpr-Chr7 28385132 28387429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2172 94 278 Eukaryotic Initiation Factors Gene Family AT1G22760 33.854 4.24e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2172 - - gmx:100790280 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2862 5 51787287 51790144 Tpr7g2172 7 28385132 28387429 PCT