Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2156 ATGGCAATTTCAATTTCTTCATCATCTACTTCCTCCAAACTTAAACTAACCCCCTCTCACTCACCAAACTCCCACACTTTCATCGCTGCTTCCGCTTCCACCCGTTCCACCACAAACCCCCCCAAACTAACCCTAACTCGTCTCACTTCATCATTCCTCAACCCATCCACAATCCTCCACTTAACTCCCACTTCCCATTACTCAAACCACCAACGTCGTTTCACCGTTCGTGCCGCACGTGGCAAATTCGAGCGCAAAAAACCTCATCTGAACATCGGTACAATTGGTCACGTCGACCATGGTAAAACCACTTTAACTGCTGCTCTTACTATGGCTCTTGCTTCTCTAGGTAACAGCGCCCCTAAAAAATACGATGAAATTGACGCTGCTCCTGAAGAGCGTGCTCGTGGTATTACTATTAATACTGCTACTGTTGAATATGAAACCGAAACTCGTCACTATGCTCATGTTGATTGCCCTGGTCACGCTGATTATGTTAAGAATATGATCACCGGTGCTGCTCAAATGGACGGCGCTATCCTCGTTGTCTCCGGTGCTGATGGTCCCATGCCTCAAACCAAAGAACACATCCTTCTCGCCAAACAGGTCGGTGTTCCGAGTGTGGTTGTGTTTTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGACCTTGAAGTTCGGGAGCTTCTCTCATCTTATGAGTTTCCTGGTGATGACATTCCGATTGTTTCTGGTTCCGCGCTCTTGGCTTTAGAAGCATTGATGGCAAATCCTACACTTAAACGTGGCGATAACAAGTGGGTGGATAAGATTTACCAGCTCATGGACGAAGTTGACAAATACATACCAATTCCTCAACGTCAAACGGATCTCCCCTTTTTGCTTGCCGTTGAGGATGTGTTTTCAATCACCGGTCGTGGAACAGTTGCCACCGGGAGAATCGAAAGAGGGACCGTTAAAGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGAACACAAGGAGCACAACAGTGACAGGAGTGGAAATGTTCCAAAAGATTTTGGATGATGCTATGGCCGGCGACAACGTGGGGTTGTTGCTGAGAGGTGTTCAGAAGGATGATATTGAGAGAGGAATGGTTTTGGCTAAGCCTGGAACTATTACTCCCCACTCTAAGTTTAGTGCTATTGTGTATGTTTTAAAGAAGGAAGAAGGTGGAAGACACTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTATATGAGAACTACCGATGTTACCGGAAAAGTTACGTCTATTATGAATGATAAAGATGAGGAGTCAAAGATGGTGATGCCTGGTGATCGTGTTAAGATGGTGGTTGAGCTAATTGTTCCCGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATCGGAGCTATCATTGTTTGA 1461 0.4565 MAISISSSSTSSKLKLTPSHSPNSHTFIAASASTRSTTNPPKLTLTRLTSSFLNPSTILHLTPTSHYSNHQRRFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVDLEVRELLSSYEFPGDDIPIVSGSALLALEALMANPTLKRGDNKWVDKIYQLMDEVDKYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVGDVVDLVGLRNTRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKDDIERGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2156 486 Pfam Elongation factor Tu C-terminal domain 385 484 IPR004160 -
Tpr7g2156 486 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 291 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 Hamap Elongation factor Tu [tuf]. 78 486 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tpr7g2156 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 313 IPR027417 -
Tpr7g2156 486 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 385 483 IPR009001 -
Tpr7g2156 486 TIGRFAM small_GTP: small GTP-binding protein domain 91 223 IPR005225 GO:0005525
Tpr7g2156 486 Gene3D Translation factors 425 485 - -
Tpr7g2156 486 PANTHER ELONGATION FACTOR TU-RELATED 29 485 - -
Tpr7g2156 486 SUPERFAMILY Translation proteins 292 388 IPR009000 -
Tpr7g2156 486 Pfam Elongation factor Tu domain 2 312 380 IPR004161 GO:0005525
Tpr7g2156 486 Gene3D Translation factors 293 421 - -
Tpr7g2156 486 CDD EF_Tu 88 290 IPR041709 -
Tpr7g2156 486 Pfam Elongation factor Tu GTP binding domain 87 288 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 PRINTS GTP-binding elongation factor signature 135 143 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 PRINTS GTP-binding elongation factor signature 171 182 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 PRINTS GTP-binding elongation factor signature 208 217 IPR000795 GO:0003924|GO:0005525
Tpr7g2156 486 MobiDBLite consensus disorder prediction 1 41 - -
Tpr7g2156 486 CDD EFTU_II 298 384 IPR033720 -
Tpr7g2156 486 Gene3D - 79 290 IPR027417 -
Tpr7g2156 486 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 128 143 IPR031157 -
Tpr7g2156 486 TIGRFAM EF-Tu: translation elongation factor Tu 79 485 IPR004541 GO:0003746|GO:0005525|GO:0006414
Tpr7g2156 486 CDD EFTU_III 387 481 - -
Tpr7g2156 486 PANTHER ELONGATION FACTOR TU 29 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2156 Tpr-Chr7 28155554 28157838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2156 85 484 Eukaryotic Initiation Factors Gene Family AT5G60390 29.730 1.14e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2156 K02358 - jre:108984280 782.326