Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2152 ATGGCTGTCAACATCAACATAAAGGGGCAAATAGAGAAGGTGAATGGAAAGGAACTAAGTTACCGTGAATTTGTTGAAAGATATATGGAGAAGAACAAACCAGTGATTCTCACCGGACTAATGGACCATCATTGGAAGGCTTCCACTGATTGGGTCACCCCAAAGGGTCAACCCAATTTTCAATTTTTTTTCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAAAGGGAGGAGTTGCTGGTCTCTGATTTCGTAGGACGTTGCCTTCAGATTGAGGGTTCTGCAGTTCAGTGCAATAATGAAAATGGTATAGGTAATGGTGATTCTATATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAATATCCAGATTATGTAGCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACTTATTCTGACAGTTCCCAGCAAAATACTGAAATATGTTGCTCTGACTATCGTTTTGTTTACGTTGGAGTTAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCGTATAGTTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCTCAACATCATCTTGTGTTTGATAGGAATGTAAAAAGTTGCGTTTATAATATCTTTGATGAAGCATCTGATTCAAAATATCCTGGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTATTAAGGGACTACAGTGAGGCCAAGGAATACATAGAAGATATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTCACTTTCATTTCATACTTTTCCTTGGCCAATTTGGTGCTGCTCTGCTACATAAACGGAAGAGATGGAAGTACTACTGGAAGTTCATCAAGAGTAGCTCAACATTTATATTTGAATATTGGGTCTATTAGGAAGGTTGCATCAGCGATGAAAAACTTGCATGCTCTAGAAGGGAATCATGATTGCATTGTGGATATGATAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATACAAGTGGGAAAAACATATTTAACAATACACGAACAATCCAATTTGTTCTCTGATTTTGAGAGTGCTTCAACGGTTGAGCTGGTGGACCTCAGTGTTTTTAAAGCGCACACTTCTCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACAATACTGTTGCAGAACTGGGCCACATTTTCATCGAGTCATCTGTACAGCGCGTTGCTTGA 1473 0.3829 MAVNINIKGQIEKVNGKELSYREFVERYMEKNKPVILTGLMDHHWKASTDWVTPKGQPNFQFFFNHFGSSKVQVADCDTRDFGDQKREELLVSDFVGRCLQIEGSAVQCNNENGIGNGDSISVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDSSQQNTEICCSDYRFVYVGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQHHLVFDRNVKSCVYNIFDEASDSKYPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYSEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGRDGSTTGSSSRVAQHLYLNIGSIRKVASAMKNLHALEGNHDCIVDMIKTFEDPRFSKFCIQVGKTYLTIHEQSNLFSDFESASTVELVDLSVFKAHTSQVYTPEDLIKFIDNTVAELGHIFIESSVQRVA* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2152 490 SMART cupin_9 124 304 IPR003347 -
Tpr7g2152 490 SUPERFAMILY Clavaminate synthase-like 7 310 - -
Tpr7g2152 490 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 477 - -
Tpr7g2152 490 Gene3D Cupin 2 288 - -
Tpr7g2152 490 Pfam Cupin-like domain 23 287 IPR041667 -
Tpr7g2152 490 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 477 - -
Tpr7g2152 490 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2152 Tpr-Chr7 28079435 28085238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2152 9 296 Glycosyltransferase AT1G78280 24.917 8.46e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr7g2152 Cupin_8 2.4e-20 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2152 - - gsj:114409851 810.831