Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2139 ATGGTTATTCCAATCATGAAAACATTGGTCACCTTAACCCAGTTAGACTTACAGCAATTTGAGAGGATCACTTCTGCCAATGCTGGAGCCATTAGTATCAAGTGGACCACTTCTCATGTTATACTCCAAAATTCCTTCAAGTGTATCCTTTTTCAATTCACCTTCATGCTTTTTTTCCCTAATTTTTCTATCATTTTGCATTTTCAATTGCCACATAGTATGCTTGTATTCTTGACACTTGAATTCTTAGAGTTATTGTTTCAATTAATTGGAAACGCTATCATATATTCTTGTACATACCCATTGCACATATGGATTGTGGTGGACTATACTGTCGTGTTTGTTTTTCGGCTCTTGATGTTTGTCGATAATGGGTTTGCTGCAAGAATGGTTAATCATCTGCAGCTGCCTGAAGAGGAGCAGAAATGGGGATTTCTTATCTGGTTACTTTTTAGCTACTATGGACTTCTTTGCATTGCTTGCATATTGTTGCAGGAATCATTTTGGCTTAACCCCTTGCAGCGGTTGACTCGACGACAAGCACACCCAGTGCGTTCCCAACAGGGTATCCCTGTGTCTGAATATGGGGTAACCGAATAA 600 0.3933 MVIPIMKTLVTLTQLDLQQFERITSANAGAISIKWTTSHVILQNSFKCILFQFTFMLFFPNFSIILHFQLPHSMLVFLTLEFLELLFQLIGNAIIYSCTYPLHIWIVVDYTVVFVFRLLMFVDNGFAARMVNHLQLPEEEQKWGFLIWLLFSYYGLLCIACILLQESFWLNPLQRLTRRQAHPVRSQQGIPVSEYGVTE* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2139 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 135 197 IPR044793 GO:0004842|GO:0010182
Tpr7g2139 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 77 131 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2139 Tpr-Chr7 27665677 27668771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2139 136 197 C3H Transcription Factor Family AT3G47990 62.903 2.24e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2139 K16284 - cit:102615803 127.102