Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2100 ATGGGACCTCTTAATTTTGTTTGTTATCTTTTGTTGGTTTTATTATTATTATGTACAGTTAGAATCCACGTCCAAGCTAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGACCAATCAAAGTCCAACGAGCCTTGGAGGAGCATGTGGTTATGATGATACCTTTCATGCTGGATTTGGAGTGAACACAGCAGCAGTGAGCACTATGCTATTCAGAAATGGTGAGGTTTGTGGTGCTTGCTACCAAGTTATATGTGACTATCGAATTGACCCAAAATGGTGTCTTAGAAGTCGAAGTGTCACAATAACTGCAACAAATTTTTGTCCTCCAAACAATCATGGAGGATGGTGTGATCCTCCTAACCATCACTTTGATATGTCAATGTCTTCTTTCCTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCTATCCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGAGGAGTTAGGTTCACATCGAAGGGGCAATCTAATTTCAACATGGTGATGATAACAAACGTGGGTGGTAGTGGTGATGTGAAGGGAGTGTGGATAAGAGGATCAAGAACTGGAACATGGTTGCCAATGCATAGGAATTAG 609 0.4187 MGPLNFVCYLLLVLLLLCTVRIHVQANGWLNAHATFYGTNQSPTSLGGACGYDDTFHAGFGVNTAAVSTMLFRNGEVCGACYQVICDYRIDPKWCLRSRSVTITATNFCPPNNHGGWCDPPNHHFDMSMSSFLRIARQGNEGIVPILYRRVACKRRGGVRFTSKGQSNFNMVMITNVGGSGDVKGVWIRGSRTGTWLPMHRN* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2100 202 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Tpr7g2100 202 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Tpr7g2100 202 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Tpr7g2100 202 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Tpr7g2100 202 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Tpr7g2100 202 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Tpr7g2100 202 Pfam Expansin C-terminal domain 159 202 IPR007117 -
Tpr7g2100 202 PANTHER EXPANSIN-A15 7 202 IPR002963 GO:0009664
Tpr7g2100 202 Pfam Lytic transglycolase 64 148 IPR009009 -
Tpr7g2100 202 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 202 IPR007117 -
Tpr7g2100 202 PANTHER EXPANSIN-A12 7 202 - -
Tpr7g2100 202 Gene3D - 158 202 IPR036749 -
Tpr7g2100 202 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 158 IPR007112 -
Tpr7g2100 202 SUPERFAMILY Barwin-like endoglucanases 28 176 IPR036908 -
Tpr7g2100 202 SMART dpbb_1 64 148 IPR007112 -
Tpr7g2100 202 Gene3D - 18 154 IPR036908 -
Tpr7g2100 202 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Tpr7g2100 202 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Tpr7g2100 202 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Tpr7g2100 202 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Tpr7g2100 202 PRINTS Expansin/Lol pI family signature 196 202 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2100 Tpr-Chr7 26627819 26630211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2100 9 202 Expansin Gene Family AT3G15370 57.143 8.34e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2100 - - gmx:100803855 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2100 7 26627819 26630211 Tpr7g2100 7 26627819 26630211 ECH