Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2077 ATGAATAATATTGGAATGGTTTTAGATAGTTTTACTGTAAAACCATTAGATGTACTTAATGGTTTTGCCTTTGAATCCAAGATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACCATTACTTTGGAGGTAGAAAGTTCTGATACAATCGATAATGTCAAGACAAAAATACAGGACAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAATCTACTCTTCATCTTGTGTTGCGCCTTCGTGGTGGATTTTTAAGTATATGA 324 0.3858 MNNIGMVLDSFTVKPLDVLNGFAFESKMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFLSI* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2077 107 Pfam Ubiquitin family 30 101 IPR000626 GO:0005515
Tpr7g2077 107 SMART ubq_7 28 99 IPR000626 GO:0005515
Tpr7g2077 107 PRINTS Ubiquitin signature 38 58 IPR019956 -
Tpr7g2077 107 PRINTS Ubiquitin signature 59 79 IPR019956 -
Tpr7g2077 107 PRINTS Ubiquitin signature 80 101 IPR019956 -
Tpr7g2077 107 ProSitePatterns Ubiquitin domain signature. 54 79 IPR019954 -
Tpr7g2077 107 Gene3D - 22 106 - -
Tpr7g2077 107 PANTHER UBIQUITIN 28 103 - -
Tpr7g2077 107 SUPERFAMILY Ubiquitin-like 24 103 IPR029071 -
Tpr7g2077 107 CDD Ubl_ubiquitin 28 103 - -
Tpr7g2077 107 ProSiteProfiles Ubiquitin domain profile. 28 103 IPR000626 GO:0005515
Tpr7g2077 107 PANTHER - 28 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2077 Tpr-Chr7 26093746 26094069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2077 28 105 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.154 4.58e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2077 - K08770 pavi:110774095 153.295