Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2068 ATGAATGTTACACGTTCTGCTTTGATACTCCATCTTCAAACCTCACCAATTCGCTTCAACAATGCTCTTCGCACCCCCATTTCACCTTCTTCTCTGTTCAATTTCAAAGCAACGCGTTTCTTTTCTCTAACCCTTCCACGCCAAACGCAGTCACAACCTGCCGTTGGAACCGCCGCTTCATCACAAGGCCGAGATACTTTCTTTGCTCAAGAAACTGTTTCGTGGAGTTCACTTGGTCTTTCCGATACCCTCTCTGCTGCTCTCTCTAAAATTGGACTCAAAACACCCTCTCTTGTTCAGGCTTCTTCTATTCCATCCGTGTTGTCAGGGAAGGATGTAGTTATTGCTGCGGAGACTGGCAGTGGTAAGACATACAGTTATCTACTCCCTCTCATTGATAAGCTGAGGGATACACAAGAACATTCTCTAGATGCTGTATCTGATAAAGAAGTCTATCCGCCGGCCAGGAAAGTTCTGCTGGTGCTTTGTCCGAATGTACAATTGTGTGAGCAGGTAGCTAGTATGGCTAATAGTCTCTGTAGCGACAATGGTGGAACCGTTGTTAATGTGGCATCCATTTGTGGAAGACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACAACACCTGCTGCTCTTCTTAATCATGTTGACGTTTATAGAACTCGCCGCATGAAATTTATGCATGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTATGATGAAAAAGTCTCGTCTCGATCAAAATCGTCAGTAGCAGAGTTGCCAATAAGTCTGGAATCTTCTTTGTCGTCAGATGATGTTTTGGAAGGTGAAGAGGAATTTTCAATTGAAGCCATCTCAGACGAGGAGGAGGAGGAGGATGATAACAGCGAGGATGTTGCTAATATTAATAACGAAGCTGAATCTATCAAGAAAAAAAGGAGTGATTGGAGGAGAGTTAGGAAACATTTTGAGCGTAGTAAACAATATGTTTTTGTTGCAGCTACACTTCCGGTGAATGGAAAGAAAACAGCTGGAGCATTGTTGAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAACTATCTTCATTGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGACCGTTGATACACAGGTGAAAGAACTCTTAAGGGCTGTGAAACACAGTTTAAAATCTGAAGATTTGGATAATGGCGGTGGCATTCATAGAACAATGGTATTTGCCAACACTGTTGAGGCTGCTGAAGCTGTTGTGAAGATATTGAGCTATGATGGGCTTGAATGTTTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAAGCATTAATTGATTTCCGCGAGATTGGTGGTGTCCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAATGTCTCTCATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGTCAAATCGGACTAGTTACTAACATGTATACCGAGTCCAACAGAGAGCTTGTGGATGCAGTTCGTCGTGCAGAGGAACTCGGTCTACCTATGGAGACCGCATTTAGCAGAAAAAGAAGTTTCCGTAACAAGATCAAAAAGAAAGCGATTGCTGACAAAGTCAGGGATTCTGCAACCATTGAAGAGAGTGTTACAGCGTGA 1743 0.4303 MNVTRSALILHLQTSPIRFNNALRTPISPSSLFNFKATRFFSLTLPRQTQSQPAVGTAASSQGRDTFFAQETVSWSSLGLSDTLSAALSKIGLKTPSLVQASSIPSVLSGKDVVIAAETGSGKTYSYLLPLIDKLRDTQEHSLDAVSDKEVYPPARKVLLVLCPNVQLCEQVASMANSLCSDNGGTVVNVASICGRQGWPIREPDIIVTTPAALLNHVDVYRTRRMKFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRYDEKVSSRSKSSVAELPISLESSLSSDDVLEGEEEFSIEAISDEEEEEDDNSEDVANINNEAESIKKKRSDWRRVRKHFERSKQYVFVAATLPVNGKKTAGALLKHMFPDAEWVSGNYLHCHNPRLKQRWIEVTVDTQVKELLRAVKHSLKSEDLDNGGGIHRTMVFANTVEAAEAVVKILSYDGLECLRYHKNCTLEERAQALIDFREIGGVLVCTDAAARGVDIPNVSHVIQADFATSAVDFLHRIGRTARAGQIGLVTNMYTESNRELVDAVRRAEELGLPMETAFSRKRSFRNKIKKKAIADKVRDSATIEESVTA* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2068 580 MobiDBLite consensus disorder prediction 300 320 - -
Tpr7g2068 580 Pfam Helicase conserved C-terminal domain 422 515 IPR001650 -
Tpr7g2068 580 Pfam DEAD/DEAH box helicase 99 262 IPR011545 GO:0003676|GO:0005524
Tpr7g2068 580 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 51 550 - -
Tpr7g2068 580 SMART ultradead3 92 389 IPR014001 -
Tpr7g2068 580 CDD DEADc 84 262 - -
Tpr7g2068 580 CDD SF2_C_DEAD 386 524 - -
Tpr7g2068 580 SMART helicmild6 435 515 IPR001650 -
Tpr7g2068 580 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 370 IPR014001 -
Tpr7g2068 580 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 51 550 - -
Tpr7g2068 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 527 IPR027417 -
Tpr7g2068 580 Gene3D - 387 580 IPR027417 -
Tpr7g2068 580 Coils Coil 301 321 - -
Tpr7g2068 580 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Tpr7g2068 580 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Tpr7g2068 580 Gene3D - 47 368 IPR027417 -
Tpr7g2068 580 MobiDBLite consensus disorder prediction 300 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2068 Tpr-Chr7 25958991 25970883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2068 329 543 Eukaryotic Initiation Factors Gene Family AT5G11200 28.455 9.79e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2068 - - gmx:100780518 798.89