Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2034 ATGGCTAATTCAGGTATGTATGTTAGAAAGACTAGGATCTCTGAAATTACCGGTGGGAAGATTGACTTCCAAATGAAAGTAAGGGTGATTAACCTATGGTCTACACCAGATCGTTCCAATCCCAACGAACAAGGAGCCCTTCACATGATTTTCCTAGATAAAGATTGTGGAAAGATATATGCATCTGTACGAAAGGACTTGCTCTCACAATTCAAAGATGATATTGAGGATGGTGCTGCTTATGTTGTGGAGAGGTTTATGGTCGGCAAGAATGATACTTCTTTCAAGAGTACCTCTCACAAGCACAAGCTCAATTTCATGCGTGGGACTAAAATGATCAAAGTAAAGGCTACTGATATTCCCGCAAACCACTTCGATTTTATGCCTTTTACAGAAATTTTGGCCTCTACTAAAGAGGATCAGTTTCTTGATGTCATTGGTCATGTAGTTGAAAAAAATACTTTGAAAGAAACCCAAAAAAATGGCAAGATCAGTAAGTTAATGGATGCAACCATTGAAGATCTGGAGGGTAACAGGATACATTGTACCTTGTGGGATGATTATGCTGTAAAAATGCAACAATTTCTTGATGGTCATGATCCATCACTTCCTGTCATAATTATACTTCAGCTTTGTAAGCTCAAGAAGTATCTTGGTGTTATGGGGGTATCCAATTCTTTCTATGGAACAAAGTTATTCTTAAATGCTGAGATGCCTGATGTGGCTAGCTATATAGAGAGAATGAATGCTGCAAATGTAGAGCTGACTCAGGGTGTTAGTCAGATGTCTGGACCCCCTGTCATAAGTGTCGCCGATGATTTGCTGCAGACACCTAGAATGACAATTGAGGATCTAATTGAATCCACTCAGAAATGCTGTGGTTCCGTGTTGGCATGGGGTTGTGAGTTCGATATGGATGCTGGTTGGTTTTACCAGGCCTGTACTAAATGTTCTTCTAGGATCAATTTTGTTTCAGGACAACTGTACAAGGTTCATCTCCAAGTTATTGACGATACAGGATCCATAACTTTTGTCATGTTCGATCGTGTTGTTTTCCAAGTGGTGGGATTGACAGCACAGGATTTGTTGGATTCTATGAACAATGATGCTAGCTCTCATCCTTATCCTCCACAGCTTGACATGTTTGTCAACAAATGGATGTTGTTCAAAGTTGAAGTAAGTGATGCCAATTTGTATCGTAATTGGCGTGGTTACAACGTGAAAAAAGTTACCTCTGATGAGAATGTTATTAATCAGTTCACTGCCATCCATGGAATAACGTTGAATGGTGATGCCAATGACACTGATTTTGAGTACCCTGAATGTGATTTGGGAGACGACACTCCATCTCTTGTGGTTGATGGAGTTGAATCAAGTAATAAACCAGATGCTATGGTTTCAAAATCTGGTCAAACACCTACAAGTAAGTTGTCTGATAAGAAGGAGGCTGATATTGGAGTTACTAATGTCTCTGCTGCTGGAAAATCAAAAGCCAAACGGATTATTGATCTTGGTGATGATGATGATGTGGTTCTCTCTGATACTCTTGATCTATTTGCCAACAAATCAACCGGAAATGTCAAAAGGATTATCCATCTTGGTGGAGATGGCGTGGCTTTTCCTAATGAGCTTAATCCATCCACTAGCAAATCAAATGTAGCAACTACTACTCATCTTGCTGAAAATCCTCTTGTGACTACCAAAGAAACCAAGCTAGCATGTGTCAAGATTGAGGGATCCAAGTGA 1746 0.3981 MANSGMYVRKTRISEITGGKIDFQMKVRVINLWSTPDRSNPNEQGALHMIFLDKDCGKIYASVRKDLLSQFKDDIEDGAAYVVERFMVGKNDTSFKSTSHKHKLNFMRGTKMIKVKATDIPANHFDFMPFTEILASTKEDQFLDVIGHVVEKNTLKETQKNGKISKLMDATIEDLEGNRIHCTLWDDYAVKMQQFLDGHDPSLPVIIILQLCKLKKYLGVMGVSNSFYGTKLFLNAEMPDVASYIERMNAANVELTQGVSQMSGPPVISVADDLLQTPRMTIEDLIESTQKCCGSVLAWGCEFDMDAGWFYQACTKCSSRINFVSGQLYKVHLQVIDDTGSITFVMFDRVVFQVVGLTAQDLLDSMNNDASSHPYPPQLDMFVNKWMLFKVEVSDANLYRNWRGYNVKKVTSDENVINQFTAIHGITLNGDANDTDFEYPECDLGDDTPSLVVDGVESSNKPDAMVSKSGQTPTSKLSDKKEADIGVTNVSAAGKSKAKRIIDLGDDDDVVLSDTLDLFANKSTGNVKRIIHLGGDGVAFPNELNPSTSKSNVATTTHLAENPLVTTKETKLACVKIEGSK* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2034 581 Gene3D - 118 257 IPR012340 -
Tpr7g2034 581 PANTHER REPLICATION FACTOR A 1, RFA1 35 422 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g2034 581 Pfam Domain of unknown function DUF223 49 138 IPR003871 -
Tpr7g2034 581 SUPERFAMILY Nucleic acid-binding proteins 11 115 IPR012340 -
Tpr7g2034 581 CDD RPA1_DBD_A_like 25 112 - -
Tpr7g2034 581 CDD RPA1_DBD_B_like 144 248 - -
Tpr7g2034 581 Gene3D - 273 421 IPR012340 -
Tpr7g2034 581 Gene3D - 10 117 IPR012340 -
Tpr7g2034 581 SUPERFAMILY Nucleic acid-binding proteins 124 250 IPR012340 -
Tpr7g2034 581 MobiDBLite consensus disorder prediction 458 481 - -
Tpr7g2034 581 SUPERFAMILY Nucleic acid-binding proteins 277 411 IPR012340 -
Tpr7g2034 581 PANTHER BNAC07G49340D PROTEIN 35 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2034 Tpr-Chr7 25285946 25288719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2034 23 394 Core DNA Replication Machinery Family AT5G08020 21.696 9.09e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2034 - - mtr:MTR_1g105785 447.588