Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1986 ATGGGCGATCATGTGGTGTTGTTTGTTGACCGTTTGGTTCGGCCTATGCCTGTTGAGCCATTGGCTCAACATCCGGCCGAACCTGCTCCTGAGCCGTTGCCGCCGGTGAACGAGACACCAGCGGGACCTTCAGGGTATTTACCAGAAGATTATGATGATGATGACGACGACGGAGAGGATGAGCCGCTGTTGCAGATGGCGGAGTGTCGAATTTGTCAGGATGATGATAGCATTAATAATTTGGAGAATCCATGTGCCTGTAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGTGTCCAACGCTGGTGTAACGAAAAAGGAGACACAACTTGTGAAATATGTCATAAGTCCTATGAACCTGGTTATACTGCTCCACCACCGCGTCCCGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCTTTGGACTTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCTGAACGCCAATTCTTCGAAGCAGAATATGATGGATATGCCGCTTCTAATGCCAATGGAGCTGCATTTTGCCGTTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCACGCACTTTCTGTCACGGATGCTGATACTGAAGATGATCCATCAACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGCTTTCTTTTACCTTGCTATATCATGGCTTGGGCGATTAGTATTTTACAACAAAGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCCTTCGTGCTACAATCCGGGCATCATAGGGGTCTGCAATTTGCCATAGCACCAGCACAAACAATGCATCCACATCTACACGAGGAACAAGTGTAG 864 0.4792 MGDHVVLFVDRLVRPMPVEPLAQHPAEPAPEPLPPVNETPAGPSGYLPEDYDDDDDDGEDEPLLQMAECRICQDDDSINNLENPCACSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYEPGYTAPPPRPEETTIDIGGGWTISGTPLDLHDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADTEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQQRRQRQEAAALAATQVAFVLQSGHHRGLQFAIAPAQTMHPHLHEEQV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1986 287 SUPERFAMILY RING/U-box 67 119 - -
Tpr7g1986 287 MobiDBLite consensus disorder prediction 21 41 - -
Tpr7g1986 287 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Tpr7g1986 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 272 IPR033275 -
Tpr7g1986 287 SMART ringv_2 68 115 IPR011016 GO:0008270
Tpr7g1986 287 MobiDBLite consensus disorder prediction 19 61 - -
Tpr7g1986 287 CDD RING_CH-C4HC3_MARCH 69 115 - -
Tpr7g1986 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 123 IPR013083 -
Tpr7g1986 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 272 - -
Tpr7g1986 287 Pfam Protein of unknown function (DUF3675) 120 236 IPR022143 -
Tpr7g1986 287 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1986 Tpr-Chr7 24210320 24213409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1986 54 115 C3H Transcription Factor Family AT2G37950 40.000 5.34e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1986 - - gmx:100817542 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1986 7 24210320 24213409 Tpr7g1986 7 24210320 24213409 ECH