Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1985 ATGACCTCAAGAAACATAGATGCAGATTCTCAAACACCACAATCAAAACAACAAACCAACATTAATAATAACATAACACCAACAACAACAACCTTAAAGTCTTCTTCACCTTTCACAAACGGAACAAATAAACGCCACTACACAACCATCACTACTCCACCACCGCCACCACCACCGCCACTTTCATCTATGAGTTATTCTTACAAAGAATGTCTCAAAAATCATGCTGCTTCTTTAGGTGGACATGCTCTTGATGGATGTGGTGAATTCATGCCATCGTCATCATCATCTATTAATCCTAATGACCCTAGATCTCTCAAATGTGCTGCTTGTGGTTGCCACCGTAATTTCCACCGCCGTGAACCACAAGAACACATCATCACCACCACTGCTGCAACCACCACCGCCACTCCCACCAACAACAACAATTACCTTAGCTGCATCTATACAACCCCATCAACAACAGTCCCACCACCACAACCACCACCGCCATTACAACTACCACACCGTGGACCCATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCAAAGCCCAAGCCCAATTTCAAGCCCATCTTCACCACCACCACTCTCACATGTACCACCTTCTTATCATTCTTCAGCACCACACATGCTCTTAGCACTTGGAAATCCTTATTCAACAGTAACACCACCACACTCCGATCACGATCAACACCACCACCACCACCACCACCAAAGAAATCTCAATTTTGCTTCATCTGTTGTTAAGCTTGAAAACAACAACAACATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCATCATCAACACAAGTAGTGGGAAAAAGAGATACAGAACAAAATTCAGCAAGGAGCAGAAAGATAAGATGCATGAATTTTCTGAGAAATTGGGATGGAGAATGCAAAAGGGTGAAGATGGATTAGTTCAGAAATTCTGCAATGACATTGGTGTTTCAAGAGGAGTATTCAAAGTTTGGATGCATAACAACAAGAATAATAGTTTGAGAAAGAGATCAGAATCTGATGTTGGAGTTGGAATTGCTACTCAAGGTGATGATGATAACAAAAACAATCATGATAATGATAGATCCAACAATGTGATTCATATGAATCAAGATGCTTGTGTCAATGTTCGTGTTGTTTCTTCTGTTGATGGTTTATCTTCTTAA 1203 0.409 MTSRNIDADSQTPQSKQQTNINNNITPTTTTLKSSSPFTNGTNKRHYTTITTPPPPPPPPLSSMSYSYKECLKNHAASLGGHALDGCGEFMPSSSSSINPNDPRSLKCAACGCHRNFHRREPQEHIITTTAATTTATPTNNNNYLSCIYTTPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPSQSPSPISSPSSPPPLSHVPPSYHSSAPHMLLALGNPYSTVTPPHSDHDQHHHHHHHQRNLNFASSVVKLENNNNINNNNNNNNNNNNNNNNSIINTSSGKKRYRTKFSKEQKDKMHEFSEKLGWRMQKGEDGLVQKFCNDIGVSRGVFKVWMHNNKNNSLRKRSESDVGVGIATQGDDDNKNNHDNDRSNNVIHMNQDACVNVRVVSSVDGLSS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1985 400 MobiDBLite consensus disorder prediction 191 206 - -
Tpr7g1985 400 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 351 - -
Tpr7g1985 400 SUPERFAMILY Homeodomain-like 273 344 IPR009057 -
Tpr7g1985 400 Pfam ZF-HD protein dimerisation region 66 122 IPR006456 -
Tpr7g1985 400 MobiDBLite consensus disorder prediction 280 300 - -
Tpr7g1985 400 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 121 IPR006456 -
Tpr7g1985 400 MobiDBLite consensus disorder prediction 1 42 - -
Tpr7g1985 400 MobiDBLite consensus disorder prediction 170 190 - -
Tpr7g1985 400 MobiDBLite consensus disorder prediction 170 208 - -
Tpr7g1985 400 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 286 343 IPR006455 -
Tpr7g1985 400 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 44 351 - -
Tpr7g1985 400 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 121 IPR006456 -
Tpr7g1985 400 Gene3D - 269 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1985 Tpr-Chr7 24179529 24181150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1985 64 346 ZF-HD Transcription Factor Family AT1G69600 38.596 1.47e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr7g1985 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1985 - - mtr:MTR_8g467340 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1985 7 24179529 24181150 Tpr7g1985 7 24179529 24181150 ECH