Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1966 ATGGAACAGTTGAAAGTGGATGCAAAAGAGGATAGTCCTCTTCGGCACAAGCCAAAAAATAACAATGCGGTCGAGTCTTCTGGCAGTCTGAGAAGTAAAAAGATATCAGCTAGATGGGATCCAACTGAAGCATGTCGGCCAATAATGGACGAAGCACCTGTGTTTCATCCGACTATTGAAGAGTTTGAAGATACACTGAGTTATATAGCAAAGATACGTCCACTAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATATGGGAAAATGCCGAATTTTCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAACGGAAACGTAGAAATAGAAAGAACTCCAAAACAGGAACATGTAGGAGAGTTTCCAATTCAGCTTCTGAAGCTAAAAATGCTTCTGAAGCTGACGAGAAATATGGATTCCAATCAGGGTCGGACTTCACGTTTAAAGACTTTCAGCAATTTGCTAAATACTTTAAGGAATGCTACTTTGGGTTGAAAGATGTCAATGAAGATGGAAAAGTCGGTGATAGTAACCAGGAAAAGAGACGAATGCCCTCCGAGGATGAAATTGAAGGTGAATACTGGCGAATAGTTGAACAACCAACTGATGAAGTCGAGGTGTATTACGGAGCTGATTTAGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCATCCTTAACTAAGGGTTATCCGGACCAGTATGCCCTTTCTGGTTGGAATCTAAATAACTTCCCGCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGATATCTCCGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACCCAAAGATATGGTATGGAGTACCTGGAAGCCATGCTTCTGCTTTTGAAGACGCGATGAAGAAACACTTGCCTGATTTGTTCGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCGTCAATTCTTAAATCTGAGGGAGTTCCCGTATATCGTACTGTTCAGCATTCTGGTGAATTTGTCATTACCTTTCCGAGGGGGTACCACTCTGGGTTCAATTGTGGGTTCAACTGTGCAGAAGCAGTAAATGTGGCTCCTGTTGATTGGTTAATGCACGGCCTGAATGCCGTTGAACTTTACAGTTTACAACGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCATCACTGGAAGCTATACGAGCCCTTACAGAATTAGATCTTCATGGAAAGGAAACTCCTAAAAATTTGAAATGGAAAAGCGTCTGTGGGAAGGATGGAGTTCTTACTAAGGCATTTAAGGCAAGGATAAAGATGGAAGAAGAGAGGCTGGACTGTCTTCCAACTCATTTTAAGAGTCTGAATATGGGCAATGATTTTGATGTGCATACCGAAAGAGAATGTTTCTCTTGCTTCTATGACTTGTACCTATCTGCCGTAGGTTGTGAGTGCTCTCCTGATAGATATTCTTGTCTTAAGCATGCTAGTTCGTTCTGCTCGTGTGAAATGGACAAAAGATTTGTTCTTCTTCGGTATAATATGAACGAGCTAAACAAATTGCATGAAGCACTTGAAGGAGATTCTCTTGCTCTTGAATTATGGGAAAATAAAAACTTCGGAATGGTTTCTGCTGTGGCCAATGAGGTTTGCTTAGATAAACCGGAGGTAGAAATAAATAAGGGTCTTGACGAAACTGGTTGCGAAGGAACCAAGGATAGTTCAAATATAAATGCACCTAGTAATGTTACTTCAGAGATAATGCAGTCTGAATCTCACCTTGTAACTCTTAGTGCACCAAATGGAAGTACAGATAGTGATAATGACAATACGATAGTCGTAGACAAAGATAAGGTGGATCAGGCAGGTTCTTTGGATTTGAATCTTGATGTTATATCTGCCGAAAATGAAAAGTATTTGCTGCGTATTGCGGATAACCATAACAAGGGTGATTCAGTGGACGAGAAAGTATGTTGTTCGGAGAACAAAAAGGAACAAGACAACATGGAACTTGATGGTGTGGGTGACCTATTACATTCATCTGTTGTGAAGACGGAAGTTTCTTCATGCTCCAGGGATGTTAACAATTCTAGTATATCTGACTGTGGAAAATATGAGGTGGATCTGCAAATGGATTCAGATTCAAGAAAGAAACCCAAAATTGTATTCGAAAAAGAAGTCATAAACACCACAAGTGCGAGTATATCTTCGACACAGGAAAGCTTTCTAATGCAAATTTTTAGTACTTCTGTCAAGCCAATTAGTTTGGGATCTGTTGTTCATGGAAAGCTATGGTGTAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGTATCCTCAATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTTATTGATGCTGGACTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGAATGTCCAAGTGACGCATTCACTGACACATCAGCTGATAAGTGTTGGGAATCAGTTCTTAAGAGACTACATAATGAAATCACGGAGCGAAGGAATCGAGGTGAACTTGAACTTCTTCCATCCTTAGAGCTTCTGAAAAGCGTTAACGGATTTAGAATGTTTGGCTTCCTTTTGCCGTCCATTATTCAGGCCATCGAAGCTCAAGATCCAAGTCATCAGTGTTCAGAATATTGGAATCACAAAGCTTTCCCTACATCTCCAGGCAGTGTCATCGATAACTGCAATTGTTCAAGTAGCCCTTTAGATAATAATGTCAATACCAAAGTTTTTGGTATCCATTTGATTGATCAGGCAAAGGACAACATAGGCGGAAGTTGTCGTTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCCTGATGAGTTAAGTTCATTGCGCAAGTTACTCGATTCTGACACACAATGCTCCGAGTGGAGAATGGCATTGACATCACTGATGGATGAGATTCAGAAAGCTTTGTAG 3117 0.403 MEQLKVDAKEDSPLRHKPKNNNAVESSGSLRSKKISARWDPTEACRPIMDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRNRKNSKTGTCRRVSNSASEAKNASEADEKYGFQSGSDFTFKDFQQFAKYFKECYFGLKDVNEDGKVGDSNQEKRRMPSEDEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDPKIWYGVPGSHASAFEDAMKKHLPDLFEEVPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALTELDLHGKETPKNLKWKSVCGKDGVLTKAFKARIKMEEERLDCLPTHFKSLNMGNDFDVHTERECFSCFYDLYLSAVGCECSPDRYSCLKHASSFCSCEMDKRFVLLRYNMNELNKLHEALEGDSLALELWENKNFGMVSAVANEVCLDKPEVEINKGLDETGCEGTKDSSNINAPSNVTSEIMQSESHLVTLSAPNGSTDSDNDNTIVVDKDKVDQAGSLDLNLDVISAENEKYLLRIADNHNKGDSVDEKVCCSENKKEQDNMELDGVGDLLHSSVVKTEVSSCSRDVNNSSISDCGKYEVDLQMDSDSRKKPKIVFEKEVINTTSASISSTQESFLMQIFSTSVKPISLGSVVHGKLWCSKHAIYPKGFKSRVNFFSILNPTRICSYVSEVIDAGLLGPLFKVTMEECPSDAFTDTSADKCWESVLKRLHNEITERRNRGELELLPSLELLKSVNGFRMFGFLLPSIIQAIEAQDPSHQCSEYWNHKAFPTSPGSVIDNCNCSSSPLDNNVNTKVFGIHLIDQAKDNIGGSCRSLEEMKSILQKASPDELSSLRKLLDSDTQCSEWRMALTSLMDEIQKAL* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1966 1038 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Tpr7g1966 1038 ProSiteProfiles FYR domain FYRN motif profile. 793 851 IPR003888 GO:0005634
Tpr7g1966 1038 ProSiteProfiles FYR domain FYRC motif profile. 853 944 IPR003889 GO:0005634
Tpr7g1966 1038 Gene3D Cupin 37 413 - -
Tpr7g1966 1038 SMART fyrn_3 807 851 IPR003888 GO:0005634
Tpr7g1966 1038 Pfam F/Y rich C-terminus 855 943 IPR003889 GO:0005634
Tpr7g1966 1038 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Tpr7g1966 1038 SMART cupin_9 263 429 IPR003347 -
Tpr7g1966 1038 MobiDBLite consensus disorder prediction 1 18 - -
Tpr7g1966 1038 SMART fyrc_3 857 952 IPR003889 GO:0005634
Tpr7g1966 1038 Pfam F/Y-rich N-terminus 804 848 IPR003888 GO:0005634
Tpr7g1966 1038 SUPERFAMILY Clavaminate synthase-like 183 454 - -
Tpr7g1966 1038 MobiDBLite consensus disorder prediction 1 36 - -
Tpr7g1966 1038 MobiDBLite consensus disorder prediction 19 33 - -
Tpr7g1966 1038 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Tpr7g1966 1038 Pfam jmjN domain 53 86 IPR003349 -
Tpr7g1966 1038 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1037 - -
Tpr7g1966 1038 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Tpr7g1966 1038 MobiDBLite consensus disorder prediction 124 142 - -
Tpr7g1966 1038 SMART JmjN_1 51 92 IPR003349 -
Tpr7g1966 1038 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 7 1037 - -
Tpr7g1966 1038 Gene3D - 795 938 - -
Tpr7g1966 1038 MobiDBLite consensus disorder prediction 116 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1966 Tpr-Chr7 23917604 23923854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1966 60 1035 JUMONJI Transcription Factor Family AT4G20400 46.545 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr7g1966 JmjC 4.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1966 - - gmx:100801775 1516.9