Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1952 ATGAACACTTCAGTTATTTTCATCATAGTAATTTTAGCTATTGTGTTTTTCATTTCTGGTGTCCTCCAACTGTTTGTTAAATTTCTCATAAGAAAAAGGTCATCTTTAACAATTTCTCAATCCAATAACAACCCTCAAATGTCTGAACCTGATCCTTACCAAAGACAGTTACAACAACTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCTTTCATTGATGCTTTACCAGTTTTTCTTTACAAAGAGATAATAGGTAATTTGAAAGAACCGTTTGATTGTGCTGTTTGTCTTTGTCAATTCACAGAACAAGACATGTTGAGATTGTTGCCTCTATGTAATCATGCTTTTCATATTGATTGCATAGATACATGGCTTTTGTCTAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAACATGGGTTTGGCTTTGAAAATAATCCTGTTTATGACTTTGAGAGTTTAAGGGAAGAAGAAGATAGGGTTTTTGACAGTGTTGTTGGTGAGGCTAATTCTGTTAACAAACATGCAGAAAATCATATAATGAGTGGTAAAAGGGTTTTTTCTGTTAGGCTTGGAAAATTTAAAAGCTCAAATAATGGAGAAGGGGGTGTGGAAAGAAATGAAGGAGAGAGTAGTACTAGTACAAGTATTGTAGATGATGTTAGGAGATGTTATTCAATGGGTTCTTACCAATATGTTGTTGATGATTCAGATTTGGTAGTGGCTTTGTGTCCTAATAGAGGTGAAGGAGGTAGCAATAATGCTAGTATGAGAAAATTGAAAGGTGGGTTTTCTCAAAATGGGAATTGTTCCATTGATGGTGGGGATATTGAAGGGAAGAAAATCAATGTTGCTAGGAAAGGTGAAAGCTTTTCTATTTCAAAGATTTGGTTATGGTCTAGGAAGGATAAGGTATCAAGTTCATCACAATCTCATTTGGTTAATTCTAATGTTAATTCAACTTTGCCATGGATGAATAGAGAGCTCAAAGAAGCAACTTAG 1011 0.3442 MNTSVIFIIVILAIVFFISGVLQLFVKFLIRKRSSLTISQSNNNPQMSEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFLYKEIIGNLKEPFDCAVCLCQFTEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFGFENNPVYDFESLREEEDRVFDSVVGEANSVNKHAENHIMSGKRVFSVRLGKFKSSNNGEGGVERNEGESSTSTSIVDDVRRCYSMGSYQYVVDDSDLVVALCPNRGEGGSNNASMRKLKGGFSQNGNCSIDGGDIEGKKINVARKGESFSISKIWLWSRKDKVSSSSQSHLVNSNVNSTLPWMNRELKEAT* 337
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1952 336 Pfam Ring finger domain 93 136 IPR001841 -
Tpr7g1952 336 SUPERFAMILY RING/U-box 72 142 - -
Tpr7g1952 336 SMART ring_2 94 135 IPR001841 -
Tpr7g1952 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 141 IPR013083 -
Tpr7g1952 336 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 326 - -
Tpr7g1952 336 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Tpr7g1952 336 CDD RING-H2_PA-TM-RING 93 136 - -
Tpr7g1952 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 326 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr7g1952 Tpr-Chr7 23552122 23554559 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1952 20 312 C3H Transcription Factor Family AT2G18650 40.566 3.70e-59 194
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1952 - - gmx:100818135 451.055