Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1930 ATGGATGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAACAGCAATGAACTTGTTGTCATCCAAGAACACAATGAGCCTAAGACAGTGAAGAACTTGGATGGCCAAGTATGTGAGATATGTGGCGATTCTGTAGGGCGGACGGTAGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGCACTCAAGTTTGCCCTCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGTCCAAGAGTTGAGGGAGATGAAGATGAAGAAGATATCGATGACATTGAATACGAATTTAAAATGGAGGAGGAAAGGTACAAGCTTAAGCATGAAGAGAGTATGCGTAGCAGAGATGACAATGAGAATACTAAATATGGGGAGCTGCCCTTATCTTCTCACACAGGTGGTGCAAATTTTGATAACAAGGAGAAAACAGATGATTGGAAGTTGCAACAAGGCAATCTGTTGATTGAAACTGATGCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTTTCAAGGAAAGTGGCAATACCTTCAGGAAGACTCAGCCCTTATAGAATGATGGTTGTGACTAGGCTTATCCTTCTAATACTCTTCTTTGAGTACAGAATCTTCCATCCAGTACCTGAAGCAATTGGACTTTGGTTCATATCTGTATCATGTGAAATCTGGCTCGCATTGTCATGGATGGTTGATCAAATTCCCAAATGGTTTCCCATTGATCGCGAGACATACCTTGATCGCCTTTCAGTCAGGTTTGAACCGGAAAACAAGCCGAACATGCTATCTCCAATTGATATCTTTGTAACAACTGCGGATCCAATCAAGGAACCACCTCTTGTTACAGCGAATACTATTCTTTCAATTTTGGCACTAGATTATCCTGCGCATAAAATCTCATGCTACGTTTCTGATGACGGTGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTCGCGCAAAAATGGGTACCTTTTTGTAAACAATTCTCTGTAGAGCCTCGAGCACCAGAGAAGTATTTCTCTGAGAAGGTAGATTTTCTGAAGGATAAGATTCAGACCACATATGTAAAGGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATCAATGCACTTGTGGCAAAATCCATGAGAATTCCTGCAGAAGGATGGAGTATGAAAGATGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGTATGATACAAATCATTCTTGGTCATTATGGAGGAGACAATAAAGATAACGAACTTCCGTCTCTTGTCTACATCTCTAGAGAGAAAAGGCCTGCATTTCAACATCACACAAAAGCTGGCGCAATGAATGCCTTGCTTCGCGTATCGGCTGTGTTGAGCAACGCTCCTTTTGTGCTCAACTTGGATTGTAATCATTATGTGAATAACAGCAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATTCAACTAGGGAATAGCATTGCCTTTGTTCAGTTTCCTCTAAGATTTGATAGTCTTGATAGAAATGATCGTTATGCCAACAAAAACACTATTTTATTTGATATTAACTTGAGGTGTTTAGATGGAATTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAAGCATTAAATGGCTTTGATCCTCCTAAGGCGGCAAAGCGCTCTCAAATCGTACAAGTACACTCAAAACAGGATGAAAATGGAGAGGATGAAAGCATTATAGAAGCAGCAGATGAAGACAAGCAGCTATTGCAATCAGATATGAATACTGAAGATAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGTGGTGTAGATCCTTCTTCAACCCAGGAAGCCTTGCTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTACGAAGATCGAACACTTTGGGGATACGAGGTTGGTATGAGCTATGGATCTATAGCAGCAGATACTCTTACAAGTTTAAAGATGCATACTCGCGGTTGGAGATCGATATACTGCATGCCAAAGAGGGCTGCTTTTCGAGGAACAGCACCAATCAATCTTACAGAAAGACTTAACCAAGTACTTAGATGGGCCGTAGGATCACTTGAAATCCTATTCAGCCGCCACTGCCCATTATGGTATGGTTTTAAGGAAGGAAGACTCAAGGTTCTTCAAAGGATTGCCTATATTAACAGCACTGTCTACCCTTTTAGTGCATTACCTCTCACAATCTACTGTATCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTAGTATTCATTTCTCTATTCATCTCAATCTTTGCTTCTGCCATTCTTGAACTAAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTCATTGGAAGTGTATCAGCACATCTCTTTGCAATTGTACAAAGCCTAATGGGAGGATTCCTTAGTAGACTCAATGCACATTTCAGCATTGTATCGAAGACACCGGACGTCGATGGCGAGTTTAACCAATTATACACAATTAGATGGACAGTACTACTAATACCTCCAACCACAGTCACAATAATCAACCTTATTGGTATTGTTGCTGGTTTCACTGATGCTATAAATAGTGGAGAACATGAATGGGGAATATTGATTGGGAAATTGTTCTTTTCTTCATGGGTTATTGCTCACCTTTATCCTTTCCTTAAAGGACTAATGGGAAGACAAAATAGAACACCAACACTTATAGTTATTTGGTCTGTTCTTTTGGCTTCTATTTTCTCTTTGGTGTGGGTAAGAATTGACCCTTTTGTGATGAAAACTAAAGGGCCTGATGTTAAACAGTGTGGAATTAGTTGCTGA 2940 0.4037 MDAKSGLFAGSLNSNELVVIQEHNEPKTVKNLDGQVCEICGDSVGRTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEEDIDDIEYEFKMEEERYKLKHEESMRSRDDNENTKYGELPLSSHTGGANFDNKEKTDDWKLQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGRLSPYRMMVVTRLILLILFFEYRIFHPVPEAIGLWFISVSCEIWLALSWMVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFVTTADPIKEPPLVTANTILSILALDYPAHKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSVEPRAPEKYFSEKVDFLKDKIQTTYVKERRTMKREYEEFKVRINALVAKSMRIPAEGWSMKDETPWPGNNTKDHPSMIQIILGHYGGDNKDNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKAAKRSQIVQVHSKQDENGEDESIIEAADEDKQLLQSDMNTEDKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTLWGYEVGMSYGSIAADTLTSLKMHTRGWRSIYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKEGRLKVLQRIAYINSTVYPFSALPLTIYCIIPAICLLTDKFITPSVGTFASLVFISLFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHLFAIVQSLMGGFLSRLNAHFSIVSKTPDVDGEFNQLYTIRWTVLLIPPTTVTIINLIGIVAGFTDAINSGEHEWGILIGKLFFSSWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVMKTKGPDVKQCGISC* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1930 979 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Tpr7g1930 979 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Tpr7g1930 979 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Tpr7g1930 979 SUPERFAMILY Nucleotide-diphospho-sugar transferases 295 755 IPR029044 -
Tpr7g1930 979 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Tpr7g1930 979 Pfam Cellulose synthase 593 973 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tpr7g1930 979 Pfam Cellulose synthase 282 583 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tpr7g1930 979 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 979 - -
Tpr7g1930 979 Coils Coil 380 400 - -
Tpr7g1930 979 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 271 376 IPR029044 -
Tpr7g1930 979 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 424 574 IPR029044 -
Tpr7g1930 979 SUPERFAMILY RING/U-box 22 105 - -
Tpr7g1930 979 PANTHER CELLULOSE SYNTHASE 1 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1930 Tpr-Chr7 22960187 22966038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1930 1 979 Cell Wall Biosynthesis AT5G17420 64.369 0.0 1377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1930 K10999 - gmx:100777270 1607.81