Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1908 ATGGACGCTCGCAAGCGTGGAAGGGTTGATGCTTCCGTCAACGTTAACGGCGGCTCCGTCAAGAAAACCAAACAAGAAATGGACTCTTTATCAAGTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGCCCATTCGGTGAGGGTTGTCACTTCTTGCATTTTGTTCCCGGTGGTTATAATGCTGTTGCCCAGATGATGAATTTAAAATCTGCTGCACCTCCTAGAAATGTTCCTGCGCCACCACCAGTTTCTAACAATGGTTCTGCACCACATTCTGTTAAAAGCCGCATATGCAACAAGTTCAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAACCTTATGCTCCATCAATTGATGATCACCGTCCTATGGCACCCACAACAGTTAATCGTATGGTTGGTCGAACAGAGGCTCCTTCTGGTCTGGGCACTACTAGCTTTGGTGCCAATTCTACTGCCAAGATCAGTGTAGAAGCTGCCTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGAATTCGAAGCAGATCTGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTACTTTTGACTCTATCAGCGTCTGCCCCACCTAAATCCACCCCAGGTGTTCCTAGTGCCCCCGGTGCTGCTGCCCAACCTGGAAGAAACATCAAAACCAAGCTGTGTGAAAATTTTGCTAAAGGATCTTGCACTTTTGGAGAAAAATGTCACTTTGCCCATGGAGCTGCTGAATTGCGCAAACTAGGAATCTAA 900 0.4578 MDARKRGRVDASVNVNGGSVKKTKQEMDSLSSGVGSKTKPCTKFFSIAGCPFGEGCHFLHFVPGGYNAVAQMMNLKSAAPPRNVPAPPPVSNNGSAPHSVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPYAPSIDDHRPMAPTTVNRMVGRTEAPSGLGTTSFGANSTAKISVEAALAGAIIGKGGVNSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSASAPPKSTPGVPSAPGAAAQPGRNIKTKLCENFAKGSCTFGEKCHFAHGAAELRKLGI* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1908 299 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 298 - -
Tpr7g1908 299 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 298 - -
Tpr7g1908 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Tpr7g1908 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 290 IPR000571 GO:0046872
Tpr7g1908 299 Gene3D K Homology domain, type 1 165 262 IPR036612 GO:0003723
Tpr7g1908 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 165 238 IPR036612 GO:0003723
Tpr7g1908 299 MobiDBLite consensus disorder prediction 1 33 - -
Tpr7g1908 299 Pfam RNA-binding, Nab2-type zinc finger 40 60 - -
Tpr7g1908 299 Pfam KH domain 172 234 IPR004088 GO:0003723
Tpr7g1908 299 SUPERFAMILY CCCH zinc finger 265 295 IPR036855 GO:0046872
Tpr7g1908 299 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Tpr7g1908 299 CDD KH-I 171 234 - -
Tpr7g1908 299 Gene3D - 263 296 - -
Tpr7g1908 299 Gene3D - 94 131 - -
Tpr7g1908 299 SUPERFAMILY CCCH zinc finger 36 60 IPR036855 GO:0046872
Tpr7g1908 299 MobiDBLite consensus disorder prediction 16 33 - -
Tpr7g1908 299 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Tpr7g1908 299 SMART kh_6 168 238 IPR004087 GO:0003676
Tpr7g1908 299 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Tpr7g1908 299 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Tpr7g1908 299 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Tpr7g1908 299 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Tpr7g1908 299 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Tpr7g1908 299 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1908 Tpr-Chr7 22508683 22513726 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g1908 KH_1 8.1e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1908 - - gmx:100817463 456.447