Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1901 ATGAATGAGAATAAGATTGATTATTTAGGAAGGATTCAACAAAACCATATACTAAATGGTGATTTTAATTCTGAGCTAGGAAATTGTTCTAGTCAATATTTTGATATTAGAAATGCTTCAAATATTGGAAATTTTAGTCAACAATTTTCTATGGAACAATCACCATATATAGTTCAAAGTCAAAACCAAGGAGTTCAAGGAAAATCATCATCTAACACAATTATAAGCCGTTTTGAGTCACCAACTTCAGCTTTTTATGCAACTGAAATTTGCATGGGATTTCCACAATATGATTACCAAGTTGGTAATAATAATAATAATGGTTTTCAACAATTTTCTAATAAGGTTAATGATTTAGAATTTCCTTTGTATCAATGTCCAAGGGAAAATAATAATCTCTACCTTGATTCAACAAATCAAACAACTAGTCACAATTTTGAGTTGTCAAATTTAAACACTTTACAACCATTGATTAGATCTCAATTAAATAGTGATCAATGTTGTAGATCTCCTGAAAAATCCAATGGTGGAAATTTTCTATTCATTGATGATGCTGCTACAATTAGTATGAGTCCATTAATTCATTCTAATGGAAATCATGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCTGTTTCACAACTGAATTTCTCTTATCAGCAAGAGAAATTGTCTCCATCAATGTCAACATGTTCTGGAAATCATGTTTCTAATGGATCATCAGTTTCAAGTAAAACAAGAATAAGATGGACTCAAGATCTTCATGAGAAATTTGTTGAGTGTGTGAATCGTCTTGGAGGCGCCGAGAAGGCAACACCAAAAGCTATATTGAGGCTGATGGAATCAGATGGATTAACAATCTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCAAAATATATGCCAGAACCAGCTCAGGGGAAATCTGAGAAAAGAAGTCATGCAGAGAATGTGAATCTTGATGTCAAATCTGGATTGCAAATTAGAGAGGCACTTCAACTTCAGCTAGATGTTCAGAGACGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTAAGAATTGAGGAACAAGGAAAGCAGCTAAAGATGATGTTTGATCAACAGCAGAAGAGAACTAGTAGTAGTGACCAATTGGACACTCAGAATTTGGACAATACATCAAATAATGATAAACCAATTAGTCCTAAAGATATTGAGGCTTCAATTTTTGAAGGGTCTGAAAATAATCCCTTATTCCCTTCAAAGATAAGTTAG 1269 0.3247 MNENKIDYLGRIQQNHILNGDFNSELGNCSSQYFDIRNASNIGNFSQQFSMEQSPYIVQSQNQGVQGKSSSNTIISRFESPTSAFYATEICMGFPQYDYQVGNNNNNGFQQFSNKVNDLEFPLYQCPRENNNLYLDSTNQTTSHNFELSNLNTLQPLIRSQLNSDQCCRSPEKSNGGNFLFIDDAATISMSPLIHSNGNHDHKVSCGSYDFPVSQLNFSYQQEKLSPSMSTCSGNHVSNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPEPAQGKSEKRSHAENVNLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKRTSSSDQLDTQNLDNTSNNDKPISPKDIEASIFEGSENNPLFPSKIS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1901 422 SUPERFAMILY Homeodomain-like 244 300 IPR009057 -
Tpr7g1901 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 246 301 IPR006447 GO:0003677
Tpr7g1901 422 Pfam Myb-like DNA-binding domain 250 299 IPR001005 -
Tpr7g1901 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 52 422 IPR044848 GO:0003700
Tpr7g1901 422 MobiDBLite consensus disorder prediction 369 399 - -
Tpr7g1901 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 303 IPR017930 -
Tpr7g1901 422 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 52 422 - -
Tpr7g1901 422 Gene3D - 245 304 - -
Tpr7g1901 422 MobiDBLite consensus disorder prediction 369 422 - -
Tpr7g1901 422 Coils Coil 332 352 - -
Tpr7g1901 422 Pfam MYB-CC type transfactor, LHEQLE motif 329 375 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1901 Tpr-Chr7 22372549 22376233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1901 238 373 G2-like Transcription Factor Family AT4G28610 59.712 6.99e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr7g1901 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1901 - - gmx:102668541 483.026