Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1900 ATGCACATAAATCAATGGGAATTATATGAACATCAAAGTTTTGAGCCTTACAACATAGTCACTCCTCTAGAAGCTATTATTCATGAATCAAATGCAAATGAAACTTATTATTATCATCATAATATTGACATTCCTATTTGGAACAATGAATTTTGCATGACAACAAAAACAGACTCACCTTTTTTGCTTTGTCAAGCCTCTAAAGATCAACCTACAACCTCATTTCAACTGGGTCTTGAATCTTTAATGTGTAGCAGTGATGATGAAGATAGTATTTCTTCTGAAAAGTGTAGTAAATTTCCCAAGCCAATTTGTGAGCAGTCCCGGTCTCCACAACAACATAAGAAGTTGGTGGAGACTGATTCTGCCCCAAATCAAAAGTCCCTTGAAATTTCCTTTGAGAGATATCAGTTGGAATCATTTACAAATCAAGACAAGAAATCTTCACCTTATGGCTTTGATTTTGCAACATCTACCAACTTTGACTCAAAGATAACTTCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGCATGAGCCATTTATTATGACAGTCAACCAGCTTGGTGGTCCAGAAAAGGCAAAGCCTAAGGCTATACTACAGATGATGGGTTTGGATCATATGCTCACAATTTCTCATGTTAAAAGTCATTTGCAGAAATATCGTTCTACATTACACACTCACAAAGCTTTGAAAGGAACATCTGAGGAAAGGAAGAGAACAGATGGGATTAATGAGCTTCAAGTCAAAATCCAAAGGCAAATAGCGGAATCACAACAATTGCAACTTGAGGTTGAAAGGAGCAATCAACGACAATTGGAGATGCAGCGAAATTTGCAACTGGTAATTGAACAGCAAAGGAAGCAACTCAAATTAATGTTATATCAACAAAAGCAAAGAAAGCAACTCAAAGTATATCGATCGATTCTAGGGTCAAGCAATGATTATTGA 957 0.3584 MHINQWELYEHQSFEPYNIVTPLEAIIHESNANETYYYHHNIDIPIWNNEFCMTTKTDSPFLLCQASKDQPTTSFQLGLESLMCSSDDEDSISSEKCSKFPKPICEQSRSPQQHKKLVETDSAPNQKSLEISFERYQLESFTNQDKKSSPYGFDFATSTNFDSKITSKGKRRLRWTKELHEPFIMTVNQLGGPEKAKPKAILQMMGLDHMLTISHVKSHLQKYRSTLHTHKALKGTSEERKRTDGINELQVKIQRQIAESQQLQLEVERSNQRQLEMQRNLQLVIEQQRKQLKLMLYQQKQRKQLKVYRSILGSSNDY* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1900 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 228 IPR017930 -
Tpr7g1900 318 MobiDBLite consensus disorder prediction 105 123 - -
Tpr7g1900 318 Coils Coil 246 280 - -
Tpr7g1900 318 MobiDBLite consensus disorder prediction 104 123 - -
Tpr7g1900 318 Gene3D - 169 227 - -
Tpr7g1900 318 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 32 306 - -
Tpr7g1900 318 Pfam Myb-like DNA-binding domain 173 224 IPR001005 -
Tpr7g1900 318 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 225 IPR006447 GO:0003677
Tpr7g1900 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 32 306 IPR044848 GO:0003700
Tpr7g1900 318 SUPERFAMILY Homeodomain-like 169 227 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1900 Tpr-Chr7 22356247 22359694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1900 158 299 G2-like Transcription Factor Family AT4G28610 46.528 1.65e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr7g1900 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1900 - - mtr:MTR_1g053800 372.859