LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g1878	ATGGGGTTTTCTTTAGCTATTGAAGAAGCACAACAAAAAGAACAAGACCAAAGGTTTTTAGGTTCCAATAACAATTCTATGATCATGGCTTCTTCTAGTATTATCAAAAGCACAACAAATTCAACAACAACTCAACTTGAATCATTTCAACAACAACAAAGCCATCAACATCTTCATCAGCAACAACAACAACAACAACAACATCAAAATCAACATCAACATCATCATATGCATGACAATCAAATTTCTTTTGGAATGATGCCTTCTTCATCTTCATCCTCTATCCCTGGCAACTACTTAAGCAAAGATTCAAGTGCTTATGATTTAGGTGAATTGGATCAAGCATTTTTTTTGTATCTTGATGGACAAGCACAAGCTGATCCTTCTAGTGTTCAAGATCAAAGACAGAATTCATCATCATCTTCAGGAATGAGACCACCACCAACTCTTAACATTTTTCCATCTCAACCAATGCATGTAGCACCACCACCACCATCCAATTCAAAGGGTAGCATGGGATTAACCTCTCCACAATCTTGTGGTTCAAAGAAAGCATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAATGAAACCCTCTCTGCACCTGCACCACCAAAACTAGTCAAGAGAGAGAACAGTCGAAAGGGTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACACCAGATCCTAAGACTCTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTTAGGAAAAAGGCTTATGTTCAGCAACTAGAAACAAGTAGGATTAAGCTTAATCAGCTTGAACAAGAGTTGCAGCGTGCTAGAACTCAAGGCGTGTTAATGGGTGGAGGTGCACTTATGGGAGGAGACCAAGGAGGCATTCCAATTTCTATGAATAGCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAATATGGGAGGTGGTTAGAGGAACACCACAGGCTAGTGTGTGAGCTAAGAGCAGCAGTTGATGAACATTTACATGAAAATGAGCTTAGGTTATATGTGGAAAATTGCTTGGCTCACTATGATCAAGTAATTAACCTAAAAGCCATTCTAGCTAGAACAGATGTGTTCCATCTTGTTTATGGTATGTGGAAGACCCCGGCTGAACGTTGCTTCATGTGGATCGGCGGATTCAGGCCATCTGAACTCATTAAGATAATTATAAGTCAAATTGAGCCACTTACTGAGCAACAAATACTTGGAATATGTGGGTTGCAACAATCAACACAAGAGGCAGAAGAAGCACTTTCACAAGGGCTAGATGCACTCAACCAATCTCTTTCAGAAACTATAACATCAGATTCTTTAAGCTGTCCTCCTAATATGGCTAACTACATGGGACAAATGGCTCTTGCCATGAACAAGCTCTCCACTCTTGAAAGTTTTGTCAGACAGGCAGATAATCTGAGGCATCAAACAATTCATCGTCTGCATCAGCTGTTAACAACTCGTCAAGCTGCAAGGTGTTTGGTTGCAATGTCCGAGTATTTCCATCGTCTTCGAGCATTGAGTTCTCTCTGGTTGACCCGTCCTCGCCAAGAATAG	1578	0.41	MGFSLAIEEAQQKEQDQRFLGSNNNSMIMASSSIIKSTTNSTTTQLESFQQQQSHQHLHQQQQQQQQHQNQHQHHHMHDNQISFGMMPSSSSSSIPGNYLSKDSSAYDLGELDQAFFLYLDGQAQADPSSVQDQRQNSSSSSGMRPPPTLNIFPSQPMHVAPPPPSNSKGSMGLTSPQSCGSKKASQPSMELANQRNETLSAPAPPKLVKRENSRKGTTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARTQGVLMGGGALMGGDQGGIPISMNSISSEAAMFDVEYGRWLEEHHRLVCELRAAVDEHLHENELRLYVENCLAHYDQVINLKAILARTDVFHLVYGMWKTPAERCFMWIGGFRPSELIKIIISQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSCPPNMANYMGQMALAMNKLSTLESFVRQADNLRHQTIHRLHQLLTTRQAARCLVAMSEYFHRLRALSSLWLTRPRQE*	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g1878	525	MobiDBLite	consensus disorder prediction	168	201	-	-
	Tpr7g1878	525	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	236	251	IPR004827	GO:0003700\|GO:0006355
	Tpr7g1878	525	Pfam	bZIP transcription factor	233	271	IPR004827	GO:0003700\|GO:0006355
	Tpr7g1878	525	SMART	brlzneu	229	282	IPR004827	GO:0003700\|GO:0006355
	Tpr7g1878	525	MobiDBLite	consensus disorder prediction	39	70	-	-
	Tpr7g1878	525	PANTHER	BZIP TRANSCRIPTION FACTOR TGA10	115	524	-	-
	Tpr7g1878	525	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	231	275	IPR004827	GO:0003700\|GO:0006355
	Tpr7g1878	525	PANTHER	TRANSCRIPTION FACTOR TGA9	115	524	-	-
	Tpr7g1878	525	MobiDBLite	consensus disorder prediction	39	77	-	-
	Tpr7g1878	525	CDD	bZIP_HBP1b-like	233	280	-	-
	Tpr7g1878	525	Gene3D	-	232	281	-	-
	Tpr7g1878	525	MobiDBLite	consensus disorder prediction	127	148	-	-
	Tpr7g1878	525	MobiDBLite	consensus disorder prediction	160	236	-	-
	Tpr7g1878	525	SUPERFAMILY	Leucine zipper domain	233	275	IPR046347	GO:0003700\|GO:0006355
	Tpr7g1878	525	MobiDBLite	consensus disorder prediction	209	236	-	-
	Tpr7g1878	525	ProSiteProfiles	DOG1 domain profile.	307	521	IPR025422	GO:0006351\|GO:0043565
	Tpr7g1878	525	Pfam	Seed dormancy control	325	399	IPR025422	GO:0006351\|GO:0043565
	Tpr7g1878	525	Coils	Coil	252	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g1878	Tpr-Chr7	22021801	22031093	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g1878	97	525	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	64.334	0.0	560

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Tpr7g1878		DOG1	9.3e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g1878	K14431		-	gmx:100800059	724.546