Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1870 ATGGATTCCAATACCCATCAACTCAAACAACAGAACCAACCCAATTCTGGGTTGCTTCGTTTTCGTTCTGCACCAACTTCACTTTTTTCTAATCTCACACCTTCTTCTTCTGTTGTTGATGATAACAATAATAATAATAAAGGTAGTAAACATTTTTGGGATGATTCTGAATCAAGATTTGTGAGTAACGATAATAATATTTCTGGTTTATCTTGTTCTAAGGAAATGAATTCTGGTTATGGTGGTGTTGGTGGTGGATTGCCACCTCATTATCCTAGACATGGTTCTGCAGCTGCTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGGTTGGTTGGTTCATTGGGAATGGATCATGAAACATCATCACATAAGAGTTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGCAACGGTGAATGGAAATAACGGAGAACTTAGTCCGTCTATGAACCGATTGAGCAGTCAAGTTAGCTTCCCTTCAAGAAACGCTTCTTCGTTGGGAATGTTGTCACACATCTCTGAAATAGATAGTGAGGATATTGAAGCAACTAGCCCTGATGATGGAGGTAGCAATGGTGATACTACACATTATGGTTCTGGATTCCCCTATAGTTCTTGGAATGATACTCAATCATTCTCAGAAAATCTCAGTGGTTTGAAACGAGGGCGAAGCGGTAACGAGAAAATGTTTTCTGATTTTCAGAGTGGAGGACTTGGAAATCAAGTTCATACATTATCACATCACTTGAGTTTACCGAAGACTTCATCCGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAACGAGGCTGCGCTACTCATCCTCGAAGCATTGCCGAAAGAGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTGCCAAACATGGACAAGCAAACTAATACATCAGACATGTTGGATTTAGCTGTTGATTACATTAAAAATCTTCAAAAGCAATTCAAGTCTCTAAGTGATAAAAGAGCAAACTGCAAATGTATGAGGATACAGAAGGCAGTTACAAATCAAATTCCTTGA 1155 0.3896 MDSNTHQLKQQNQPNSGLLRFRSAPTSLFSNLTPSSSVVDDNNNNNKGSKHFWDDSESRFVSNDNNISGLSCSKEMNSGYGGVGGGLPPHYPRHGSAAATSSSAMDGSFGLVGSLGMDHETSSHKSFGSNLLRQGSSPAGLFSNISFQNGFATMKGVGNYATVNGNNGELSPSMNRLSSQVSFPSRNASSLGMLSHISEIDSEDIEATSPDDGGSNGDTTHYGSGFPYSSWNDTQSFSENLSGLKRGRSGNEKMFSDFQSGGLGNQVHTLSHHLSLPKTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRIQKAVTNQIP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1870 384 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
Tpr7g1870 384 Gene3D - 307 380 IPR036638 GO:0046983
Tpr7g1870 384 SMART finulus 312 362 IPR011598 GO:0046983
Tpr7g1870 384 Coils Coil 353 373 - -
Tpr7g1870 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 371 IPR036638 GO:0046983
Tpr7g1870 384 PANTHER TRANSCRIPTION FACTOR BHLH130 10 376 - -
Tpr7g1870 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 376 - -
Tpr7g1870 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1870 Tpr-Chr7 21916122 21920730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1870 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.148 2.91e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g1870 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1870 - - gmx:100819605 526.554