Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1848 ATGGCAGACCCTTATTCTAATTTTTTCTCATCAAATTTCTTTCAATTCAATAATAATAATAATTCAACACACCATTTCCCTTCTTCAAACCCTTCACCCCACCACCATCATCCTAATTATCTTCACAATTTCATCAACCACACAACTTTTAACAACACTAACACCAACAACACCAACACTTTTTTCCACTACCATCATCATCTTCACCATCTTCAATCTACACCATCTTCTTCATATTCTTCATCTTCACCTTCTTCCCCTCCTTTAAAAGAAGCTCTTCCACTTTTGAGTCTAATCCCTACAAAACAAGAAGAATATGATGTCTTGGAACAACATCATCATCTTCATCAAATTCATCATGATGAAACTTGCACTTCAATGGAAGTGGAGGATTGTAGGTATAATAATAATAATAATAATAAAGTAGAGAAAAAAGATGATGATGATGATGATGAAAGTGTGACTGTTGCACTTCATATAGGGTTACCAAACCCTAGTGCTGCTGAGATAGCAACTATGATGATGTCTTCTTCATCTTCTGAGATGATGAATAATGAAAGAGATAATCAATTATTACAAGGAGATGTTATAAGTGAGGATTCTTGTTCAGCTGGTTTGTTGAGTAGTAATAGATCACAAATCAATAAGGGTCAGTATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGTCCGGAATCTCTGCGAGGTACACAACCTACAGGTATGCTGAGGCTTCCATGTTATTGTTGTTCACCAGGTTGCAGGAACAACATCGATCATCCAAGAGCGAAGCCGTTGAAAGATTTCAGAACACTTCAAACACATTACAAAAGAAAACATGGAATTAAGCCTTTTATGTGTAGAAAATGCGGTAAGGCTTTCGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTTTATGTGGTTCTGATTTTAAGCATAAGAGATCACTAAAGGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATCAATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGACTCCACTCAGACTCAGTAG 1194 0.371 MADPYSNFFSSNFFQFNNNNNSTHHFPSSNPSPHHHHPNYLHNFINHTTFNNTNTNNTNTFFHYHHHLHHLQSTPSSSYSSSSPSSPPLKEALPLLSLIPTKQEEYDVLEQHHHLHQIHHDETCTSMEVEDCRYNNNNNNKVEKKDDDDDDESVTVALHIGLPNPSAAEIATMMMSSSSSEMMNNERDNQLLQGDVISEDSCSAGLLSSNRSQINKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGINGFEEEDEPASEVEQDNDSTQTQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1848 397 PANTHER ZINC FINGER PROTEIN WIP2 23 394 IPR043584 GO:0003700|GO:0010468
Tpr7g1848 397 SMART c2h2final6 234 256 IPR013087 -
Tpr7g1848 397 SMART c2h2final6 318 338 IPR013087 -
Tpr7g1848 397 Gene3D Classic Zinc Finger 233 256 - -
Tpr7g1848 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 318 338 IPR013087 -
Tpr7g1848 397 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Tpr7g1848 397 MobiDBLite consensus disorder prediction 378 397 - -
Tpr7g1848 397 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 23 394 - -
Tpr7g1848 397 SUPERFAMILY beta-beta-alpha zinc fingers 300 338 IPR036236 -
Tpr7g1848 397 Gene3D Classic Zinc Finger 295 372 - -
Tpr7g1848 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1848 Tpr-Chr7 21642877 21646727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1848 1 397 C2H2 Transcription Factor Family AT3G57670 58.454 1.03e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g1848 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1848 - - gmx:100783088 453.751