Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1792 ATGACTAGAAAAAAGGTGAAACTTGCTTTCATTTCAAATGATGTTGCAAGAAAAACAACATATAAGAAAAGGCAAAAGGGTCTATTGAAGAAGGTTGAAGAACTAAGCACCCTTTGCGGAATTGATGCATGCGCTATAATTTATGGCCCTTATGATCCTCAACCTGAGATTTGGCCAACACCGCAGGGAGTTCAAAGTGTGCTCTCAAAATTCAGGACGATACCTGAATTTGAGAAGAGCAAAAAAATGTTGAATCAAGAGACATTCATGCAACAAAGGATTTTGAAGGCTAAAGATCAAGTGAAGAAGCAAATGAAAGATAATAAGGAGAAAGAGATGACACTTCTAATGTTTCAATGCCTTAATTTAGGTGAAATTGTACACAACAATTTGTCAAGGACTGATTTGAATCATCTTGATTGGTTGATCGATCAAAATTTGAAGGACATTGATAAAAGGTTGGAAGTAGAAGATAATAATTATAATAATGGCCCAAGTCAAATCATAACTACTCAAAACCAAGTTCCAGTCCAAATGGCACTACCACCGTCGTCGCCACCACCGGCAACACCTTGGAAGGAGGAAATGACAATGGTGATGGGTCATAGTGGAATGACAATGAATAATGATGACATCATGCAAAGGAAGTTCTTGATGGATTTGATGGTGAATGGTAATGGAGATGAGACAATTCCATTTGGTCATCCTCATGATGCAAATCTTCAAAGTGGATTTTGGTCTAATCAACTACCTTAA 756 0.373 MTRKKVKLAFISNDVARKTTYKKRQKGLLKKVEELSTLCGIDACAIIYGPYDPQPEIWPTPQGVQSVLSKFRTIPEFEKSKKMLNQETFMQQRILKAKDQVKKQMKDNKEKEMTLLMFQCLNLGEIVHNNLSRTDLNHLDWLIDQNLKDIDKRLEVEDNNYNNGPSQIITTQNQVPVQMALPPSSPPPATPWKEEMTMVMGHSGMTMNNDDIMQRKFLMDLMVNGNGDETIPFGHPHDANLQSGFWSNQLP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1792 251 Gene3D - 14 113 IPR036879 GO:0003677|GO:0046983
Tpr7g1792 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr7g1792 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr7g1792 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr7g1792 251 PANTHER MADS BOX PROTEIN 2 168 - -
Tpr7g1792 251 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 168 - -
Tpr7g1792 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tpr7g1792 251 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr7g1792 251 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr7g1792 251 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1792 Tpr-Chr7 20862001 20862814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1792 1 160 Type I MADS-box Gene Family AT5G48670 58.125 3.83e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr7g1792 SRF-TF 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1792 - - mtr:MTR_4g032620 269.24