Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1784 ATGCCGAAGGCTAAACTTGATAACAGGGCACCACAATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGGAGTCTAGGAGTGCATATATCAAAGGTGAGGTCCACAACTTTGGATACATGGTTGCCAGAACAAGTTTCTTTCATGCAATATACGGATAATGTGAAGTCAAATAAGCCCTGGGAAGCTAAACTGCCACCAAATTTTGACAGAAATGGACGTAGAATCGAGAAGTTTATCTGTGCCAAGGCACCACGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACTGGAGTCTAGGAGTGCATATATCAAAGATAATGTCTGAACTTCAAAATCCAATCCATGTGGAATTTGGTAAAGTCCTGTGTGGAAAGCATGGCATAATTTGTGAGAGTGTTCTTTCAGAATTTAAGGAGTTGGTACTAATGTGTGGAGGGCCCAATGAGAAACTTAGAGCTAACAAGTTAATAAATTGTCTCAGGTAG 531 0.4087 MPKAKLDNRAPQWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQYTDNVKSNKPWEAKLPPNFDRNGRRIEKFICAKAPRWASVNLGIFICMQCSGIHWSLGVHISKIMSELQNPIHVEFGKVLCGKHGIICESVLSEFKELVLMCGGPNEKLRANKLINCLR* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1784 176 PRINTS HIV Rev interacting protein signature 19 36 IPR001164 GO:0005096
Tpr7g1784 176 PRINTS HIV Rev interacting protein signature 40 61 IPR001164 GO:0005096
Tpr7g1784 176 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 90 IPR001164 GO:0005096
Tpr7g1784 176 CDD ArfGap 9 90 - -
Tpr7g1784 176 ProSiteProfiles ARF GTPase-activating proteins domain profile. 92 123 IPR001164 GO:0005096
Tpr7g1784 176 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 89 123 IPR044520 GO:0005096
Tpr7g1784 176 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 7 90 IPR044520 GO:0005096
Tpr7g1784 176 Pfam Protein of unknown function (DUF1308) 121 173 IPR010733 -
Tpr7g1784 176 SUPERFAMILY ArfGap/RecO-like zinc finger 89 127 IPR037278 -
Tpr7g1784 176 Gene3D Arf GTPase activating protein 6 88 IPR038508 -
Tpr7g1784 176 Gene3D Arf GTPase activating protein 89 132 IPR038508 -
Tpr7g1784 176 SUPERFAMILY ArfGap/RecO-like zinc finger 8 89 IPR037278 -
Tpr7g1784 176 Pfam Putative GTPase activating protein for Arf 89 123 IPR001164 GO:0005096
Tpr7g1784 176 Pfam Putative GTPase activating protein for Arf 8 86 IPR001164 GO:0005096
Tpr7g1784 176 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 89 123 - -
Tpr7g1784 176 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 7 90 - -
Tpr7g1784 176 SMART arf_gap_3 5 95 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1784 Tpr-Chr7 20743041 20754822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1784 11 90 C2H2 Transcription Factor Family AT4G05330 48.837 7.06e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1784 K12486 - gmx:100816853 150.214