Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1780 ATGGTGAGAGGAAAAACTCAAATGAAACGTATAGAAAATCCAACAAGTAGACAAGTAACATTTTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCTTTTGAATTGTCAGTGTTGTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCTAGCTCAAGCACTCCAGAAACAATTGAAAGATACCGCAACCATAACAGGATAAATAATATACCAATGACATCTGAATCAGTTGAGAATACTCAGCATTTGAGGCAAGAAGCAGAAAACATGATGAAGAAGATTGACCTTCTTGAGACTTCAAAACGGAAATTCTTAGGAGAAGGTCTGGGGTCTTGTTCCATTGAGGAACTACAAAAGATAGAACAACAGTTGGAGAAAAGTATAACCAAAATCCGAGCAAAAAAGACTCAGGTTTACCGGGAACAAATTCAGCATCTAAAAGAAAAGGAAAAAGCCCTTATTGCTGAAAATGTCAAGCTCTCTGAGAAGGCAGCAAAAAAGCCTCAGAGAGAAAGTGTACAAGAGGCTGAACCCTATGTAGATCAAAGTAGTCCAAGTTCAGATGTGGAAACTGAATTGTTCATTGGACTTCCAGAAACAAGAACAAGGCGTATTCCTCCAAAGATCTAG 654 0.3807 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSTPETIERYRNHNRINNIPMTSESVENTQHLRQEAENMMKKIDLLETSKRKFLGEGLGSCSIEELQKIEQQLEKSITKIRAKKTQVYREQIQHLKEKEKALIAENVKLSEKAAKKPQRESVQEAEPYVDQSSPSSDVETELFIGLPETRTRRIPPKI* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1780 217 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Tpr7g1780 217 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g1780 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g1780 217 Coils Coil 88 108 - -
Tpr7g1780 217 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Tpr7g1780 217 Coils Coil 151 171 - -
Tpr7g1780 217 MobiDBLite consensus disorder prediction 169 201 - -
Tpr7g1780 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 PANTHER MADS BOX PROTEIN 1 207 - -
Tpr7g1780 217 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Tpr7g1780 217 MobiDBLite consensus disorder prediction 184 198 - -
Tpr7g1780 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr7g1780 217 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tpr7g1780 217 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1780 Tpr-Chr7 20641348 20664090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1780 1 159 MADS-box Gene Family AT2G45660 72.050 9.27e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr7g1780 K-box 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1780 - - mtr:MTR_8g033220 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1780 7 20641348 20664090 Tpr7g1780 7 20641348 20664090 ECH