Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1779 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAAAATGCAACAAGTCGACAAGTAACATTTTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCTTTTGAGTTGTCAGTGTTATGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCTAGCTCAAGCGTTTCAGAAATAATTGGACGATACCGCTGTCATTGCAAGATTAATAATACTACAACAACATCTGAATCAGTTGAAAATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGAGGAGGAAGATTGACCTTCTTGAGACTTCAAAACGGAAATTCTTAGGAGATGGTTTGGGGTCTTGTTCCATTGAAGAACTAGAAAAGATAGAGCAACAGTTGGAGAAAAGTGTAGCCAAAATTCGAACAAAAAAGACTCAGGTTTTCAGGGAACAAATTGAGAAGCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGTCAAGCTCTCTGAGAAGGCAGCAAAAAAGTCTCAGAGAGAAAGTGTACAAGAGGCTGAACCCTATGTAGATCAAAGTAGTCCAAGTTCATATGTGGAGACTGAATTGTTCATTGGACTTCCAGAAACAAGAACAAGGCGTATTCCTCCAAAGATCTAG 654 0.3807 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSVSEIIGRYRCHCKINNTTTTSESVENTQHLKEEAENMRRKIDLLETSKRKFLGDGLGSCSIEELEKIEQQLEKSVAKIRTKKTQVFREQIEKLKEKEKALVAENVKLSEKAAKKSQRESVQEAEPYVDQSSPSSYVETELFIGLPETRTRRIPPKI* 218
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1779 217 Coils Coil 88 108 - -
Tpr7g1779 217 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Tpr7g1779 217 PANTHER MADS BOX PROTEIN 1 207 - -
Tpr7g1779 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 Coils Coil 151 171 - -
Tpr7g1779 217 MobiDBLite consensus disorder prediction 171 192 - -
Tpr7g1779 217 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g1779 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Tpr7g1779 217 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Tpr7g1779 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr7g1779 217 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Tpr7g1779 217 Coils Coil 122 145 - -
Tpr7g1779 217 ProSiteProfiles K-box domain profile. 88 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr7g1779 Tpr-Chr7 20524246 20536265 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1779 1 159 MADS-box Gene Family AT2G45660 72.327 3.76e-77 227
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr7g1779 K-box 2.2e-26 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1779 7 20524246 20536265 Tpr7g1779 7 20524246 20536265 ECH