Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1777 ATGGGTAGAGGAAGAATTGAATTGAAGAGGATAGAGAACAAAATTAACCGGCAAGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAATTATCTGTTCTATGTGATGCTGAAGTTGCTCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGGGACTTCCAAAACTATTGAGCGATACCAACGGTGCTCATTTAATCCACAACAAGATGACCACCAAATCGATTGTGAAACACAGAGTTGGTACCAAGAGGTGTCTAAGCTGAAGGTTAAGTATGAGGCTCTTCAAAAGACTCAGAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGCTGCATAATCTTGAGAAACAACTTGAAGGTGCTTTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGGTTGAACAGATGGAAGAGCTTCGCAAAAGGGAATGCCATTTAGGAGACATGAACAAACAACTAAGACTCAAGCTTGAAAGCGAGGGATTTAATCTTAAAGCTATGGGAAGCTTGTGGAGTTCTAATTCAATTGCTGGAAATAGCAACTTTACCTTTCAGCCACCTCAAACCAACCCTATGACTATGAATATGGATATTCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTATGTTCAAGCTGAGGCATCTAATGTTTCAAAGAGCATGGCTTGTGAGACTAACTTCATGCATGGATGGATCCTTTGA 750 0.3973 MGRGRIELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTSKTIERYQRCSFNPQQDDHQIDCETQSWYQEVSKLKVKYEALQKTQRQLLGEDLGPLNIKELHNLEKQLEGALAQARQRKTQIMVEQMEELRKRECHLGDMNKQLRLKLESEGFNLKAMGSLWSSNSIAGNSNFTFQPPQTNPMTMNMDIQAEPFLQIGYQQYVQAEASNVSKSMACETNFMHGWIL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1777 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 235 - -
Tpr7g1777 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g1777 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Tpr7g1777 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr7g1777 249 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Tpr7g1777 249 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Tpr7g1777 249 Coils Coil 121 144 - -
Tpr7g1777 249 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr7g1777 249 PANTHER MADS BOX PROTEIN 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1777 Tpr-Chr7 20498402 20505396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1777 1 249 MADS-box Gene Family AT2G45650 63.813 7.55e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr7g1777 K-box 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1777 K09264 - gmx:100820061 409.838