Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1758 ATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACCGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATAGTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACAAGTTGTCGGAGAAGTTTCTCAGACTTCATCACATACTTCATCGACAGAAGTTGTCGAAACTGCTGAGAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCGTCAGCTATTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCACGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACCAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGTCATACTGCTGAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCCAGGGCCCTTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTGTTGGCAAAGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGCAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAGTCACATCCCTTATTTGTTGGGGCAACTTCTTACTATCAAGTTCATTGGACTGCACTATTAAGGTCTGGGCTGAAAGTCAAGAGAAAACTTTGCAAGTGGCATATTCGCACATTGTGGAAAGCGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCAAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGACTATTTGCTCGACAAGAAGTTAGATCAATCGAGAAAGGTCCTGGTGGACTGATCTTCACTGGAGATGGAACTGGTTTGGTGACTGTCTCAAAATGGTCGGAAGAAGCCAAAGTAGAAGCAGCATAG 1410 0.4298 MVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESEENSLTKRAATVWIRNSGDCISKTPLVEPSQTSSPTISTQVVGEVSQTSSHTSSTEVVETAESSSPILSTAVVEVSQSSSAILSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAECANVTNLGDEVNSLISQGPWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTVGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLICWGNFLLSSSLDCTIKVWAESQEKTLQVAYSHIVESGIVALNAMTDAEDKTILFCSCQDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEEAKVEAA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1758 469 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Tpr7g1758 469 ProSiteProfiles Zinc finger C3H1-type profile. 138 165 IPR000571 GO:0046872
Tpr7g1758 469 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
Tpr7g1758 469 PANTHER - 10 467 IPR044715 -
Tpr7g1758 469 SUPERFAMILY CCCH zinc finger 141 163 IPR036855 GO:0046872
Tpr7g1758 469 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Tpr7g1758 469 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Tpr7g1758 469 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Tpr7g1758 469 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 10 467 - -
Tpr7g1758 469 Gene3D - 155 298 IPR015943 GO:0005515
Tpr7g1758 469 SUPERFAMILY WD40 repeat-like 166 455 IPR036322 GO:0005515
Tpr7g1758 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 208 - -
Tpr7g1758 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 335 - -
Tpr7g1758 469 MobiDBLite consensus disorder prediction 83 117 - -
Tpr7g1758 469 Gene3D - 302 468 IPR015943 GO:0005515
Tpr7g1758 469 SMART c3hfinal6 138 164 IPR000571 GO:0046872
Tpr7g1758 469 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Tpr7g1758 469 Pfam WD domain, G-beta repeat 337 371 IPR001680 GO:0005515
Tpr7g1758 469 Pfam WD domain, G-beta repeat 295 332 IPR001680 GO:0005515
Tpr7g1758 469 Pfam WD domain, G-beta repeat 173 208 IPR001680 GO:0005515
Tpr7g1758 469 SMART WD40_4 293 332 IPR001680 GO:0005515
Tpr7g1758 469 SMART WD40_4 335 372 IPR001680 GO:0005515
Tpr7g1758 469 SMART WD40_4 375 419 IPR001680 GO:0005515
Tpr7g1758 469 SMART WD40_4 248 285 IPR001680 GO:0005515
Tpr7g1758 469 SMART WD40_4 169 208 IPR001680 GO:0005515
Tpr7g1758 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Tpr7g1758 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 381 IPR001680 GO:0005515
Tpr7g1758 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1758 Tpr-Chr7 20289164 20291972 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1758 176 419 Acyl Lipid Metabolism Gene Families AT3G18860 24.615 1.18e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g1758 WD40 1.1e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1758 - - mtr:MTR_8g028700 498.049