Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1749 ATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACCGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATAGTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACAAGTTGTCGGAGAAGTTTCTCAGACTTCATCACATACTTCATCGACAGAAGTTGTCGAAACTGCTGAGAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCGTCAGCTATTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCACGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACCAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGTCATACTGCTCAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCCAGGGCCCTTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTGTTGGCAAAGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGCAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAGTCACATCCCTTATTTGTTGGGGCAACTTCTTACTATCAAGTTCATTGGACTGCACTATTAAGGTCTGGGCTGAAAGTCAAGAGAAAACTTTGCAAGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCGAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTACAGAGAGGGGTAGACTATTTGCTCGACAAGAAGTTAGATCAATCGAGAAAGGTCCTGGTGGACTGATCTTCACTGGAGATGGAACTGGTTTGGTGACTGTCTCAAAATGGTCGGAAGAAGCCAAAGTAGAAGCAGCATAG 1416 0.4301 MVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESESEENSLTKRAATVWIRNSGDCISKTPLVEPSQTSSPTISTQVVGEVSQTSSHTSSTEVVETAESSSPILSTAVVEVSQSSSAILSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAQCANVTNLGDEVNSLISQGPWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTVGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLICWGNFLLSSSLDCTIKVWAESQEKTLQVAYSHNVENGIVALNAMTDAEDKTILFCSCRDNSVRLYELPSFTERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEEAKVEAA* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1749 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 383 IPR001680 GO:0005515
Tpr7g1749 471 MobiDBLite consensus disorder prediction 85 119 - -
Tpr7g1749 471 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Tpr7g1749 471 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Tpr7g1749 471 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Tpr7g1749 471 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Tpr7g1749 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 210 - -
Tpr7g1749 471 Gene3D - 157 296 IPR015943 GO:0005515
Tpr7g1749 471 Gene3D - 297 470 IPR015943 GO:0005515
Tpr7g1749 471 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
Tpr7g1749 471 SUPERFAMILY CCCH zinc finger 143 165 IPR036855 GO:0046872
Tpr7g1749 471 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 10 469 - -
Tpr7g1749 471 SUPERFAMILY WD40 repeat-like 168 457 IPR036322 GO:0005515
Tpr7g1749 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Tpr7g1749 471 SMART WD40_4 337 374 IPR001680 GO:0005515
Tpr7g1749 471 SMART WD40_4 295 334 IPR001680 GO:0005515
Tpr7g1749 471 SMART WD40_4 250 287 IPR001680 GO:0005515
Tpr7g1749 471 SMART WD40_4 377 421 IPR001680 GO:0005515
Tpr7g1749 471 SMART WD40_4 171 210 IPR001680 GO:0005515
Tpr7g1749 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 337 - -
Tpr7g1749 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Tpr7g1749 471 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Tpr7g1749 471 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Tpr7g1749 471 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Tpr7g1749 471 PANTHER - 10 469 IPR044715 -
Tpr7g1749 471 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
Tpr7g1749 471 Pfam WD domain, G-beta repeat 297 334 IPR001680 GO:0005515
Tpr7g1749 471 Pfam WD domain, G-beta repeat 339 373 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1749 Tpr-Chr7 20192271 20195108 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1749 178 421 Acyl Lipid Metabolism Gene Families AT3G18860 24.615 3.67e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g1749 WD40 1.1e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1749 - - mtr:MTR_8g028700 507.679