Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1739 ATGGCCAATGAATCTGAATCCGAAGTCTGTGATAATGCAATTCCACCACCAAAAATTCGCAAAAGAGAGTGTGAGGATGAAGATCAGGAGGAAGTGATTACAAAGAAGCAGAAGAGAGATGATGTTGTTGTAAAGCAAGAGAATGAGGAAGAAATTAATCCAGATTATTCTGAACATGATAATAAACTTGAAGCGGAAAATGAATCTGCTACTGGTTGTGCTACTTTGGAATCATTGGATGATGGTAGCGCAGATTCTGACTCTCCCAGAAGCTTTGGTGAGGATAATCCTGAAGATTTAGAGAGTCCAGAGTACAACGAGGAAAAAATTTCCAAAACACCTCAGGAAAGGCATGAAACCCCAGTCACACTAACTGGAAAATATGCTGAATCGAAGACAATATTTGTTAGAAACCTGTCATATAGTGTGGAACGGACTGATATGGAAGATATTTTCAAAGATTGCGGTGAAGTTGTTGATGTTCGATTCAGCATAGATCCCGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAAGCCCTTAAATTGGATAATACAGAATTATTGAATCGTCACATCAAAGTTAGTATAGCTGTAGAAAAGAGTGATTATCCCCCCTATAAAAGCTCATTCCATAAGGTTGGAAATCTTCAATCTCACACTGTAAAGGGTTTTGACGCATCCCTTGTAGAAAACAAGCCTAAAAGTCCAGCTACACCAAATGAAACAAATGGTGCATCAAAGACCATATATGTCAGAAACTTGTCATACTCCGTGGAACGAGCTAATATGGAAAATCTTTTCAAAGATTGTGGAGAAATCGTTGATGTTCGTCTCCATACAGATCGCGAAGGAAAGTTTAAAGGCTATGGACATGTTCAGTTTGCCACAGCAGAAGCAGCACAAAAGGCTCTTGCGTTGAACAAGAAAGTATTTTTTAATCGTCTTATGTTTGTTGGTTTAGCTCAGGAAAGGGGTAAATATTCCCCTAATAGAAGCTGGTCCTGGAGCAGCTTATTCCATAAGGATGAAAAAATTCAGTCTCAAACTGTACCTGTGAAGTGTTTTGATACATCCCTTGCGGAAGACAAATTGACTTGTGCAAAGGAGGAGGTTAAAGATATAGAGATGTTTGATGCTGCCCCTGCTGAGAGTAAAGTTCCTGAAACCCCATCTATCGGAAAAGCGAAAAATGATGCATCAAAAACAATATGTGTTAGAAATTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGCGGAGAAGTTGTTGATGTCCGACTCCATGTGGATGTTGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGAGTTGGATAACACAAGATTAATGAACCGTCCCATCAAAGTTGGTACAGCTTCAGAAGAGGGTGAATGTTTCCCGAACAGAGGCTCGAGCATCTCATTCCAGAAGGCCGAAAGTTTTCAGCCTCTAACTGTATTTGTGATTGGATTTGATACATCCGTTGCAGAAGAGAAGATAAAAGCTAGCCTGTATAAGCATTTCTGTTCTTGCGGAGAGATTACAAGGATCTCAATACCAAAATTTCCTGATTCTGGTACTGTTAAGGGGTTTGCTCATTTGGACTTCAAGGATACTGTTGGCTATAATAAAGCACTAAAACTTGATCAAACTGCCATTGGAAATCATTGGCTGGCAGTTGAAAGAGCAAAGCCAAGGATAAGACGTGATAATTATGGTATAGGTGGTGGTAGAGGTGGCTATCACGTCGGTGGTAGGGATGCAGGAGACCATGGCGGGAGAACTGGATGGGGCAGAAGTCATGGTGCAGGGAGGCACTGGACAGCCAATACCGAGCACTGGTGA 1890 0.4111 MANESESEVCDNAIPPPKIRKRECEDEDQEEVITKKQKRDDVVVKQENEEEINPDYSEHDNKLEAENESATGCATLESLDDGSADSDSPRSFGEDNPEDLESPEYNEEKISKTPQERHETPVTLTGKYAESKTIFVRNLSYSVERTDMEDIFKDCGEVVDVRFSIDPEGRFRGFGHVEFGTAEAAQKALKLDNTELLNRHIKVSIAVEKSDYPPYKSSFHKVGNLQSHTVKGFDASLVENKPKSPATPNETNGASKTIYVRNLSYSVERANMENLFKDCGEIVDVRLHTDREGKFKGYGHVQFATAEAAQKALALNKKVFFNRLMFVGLAQERGKYSPNRSWSWSSLFHKDEKIQSQTVPVKCFDTSLAEDKLTCAKEEVKDIEMFDAAPAESKVPETPSIGKAKNDASKTICVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEKALELDNTRLMNRPIKVGTASEEGECFPNRGSSISFQKAESFQPLTVFVIGFDTSVAEEKIKASLYKHFCSCGEITRISIPKFPDSGTVKGFAHLDFKDTVGYNKALKLDQTAIGNHWLAVERAKPRIRRDNYGIGGGRGGYHVGGRDAGDHGGRTGWGRSHGAGRHWTANTEHW* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1739 629 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 42 345 - -
Tpr7g1739 629 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 495 615 - -
Tpr7g1739 629 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 380 476 - -
Tpr7g1739 629 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 42 345 - -
Tpr7g1739 629 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 380 476 - -
Tpr7g1739 629 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 495 615 - -
Tpr7g1739 629 Gene3D - 483 618 IPR012677 -
Tpr7g1739 629 Gene3D - 98 227 IPR012677 -
Tpr7g1739 629 MobiDBLite consensus disorder prediction 83 116 - -
Tpr7g1739 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 412 470 IPR000504 GO:0003723
Tpr7g1739 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Tpr7g1739 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 571 IPR000504 GO:0003723
Tpr7g1739 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 323 IPR000504 GO:0003723
Tpr7g1739 629 SUPERFAMILY RNA-binding domain, RBD 127 220 IPR035979 GO:0003676
Tpr7g1739 629 MobiDBLite consensus disorder prediction 1 120 - -
Tpr7g1739 629 MobiDBLite consensus disorder prediction 15 66 - -
Tpr7g1739 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 410 476 IPR000504 GO:0003723
Tpr7g1739 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 580 IPR000504 GO:0003723
Tpr7g1739 629 SUPERFAMILY RNA-binding domain, RBD 497 609 IPR035979 GO:0003676
Tpr7g1739 629 MobiDBLite consensus disorder prediction 607 629 - -
Tpr7g1739 629 Gene3D - 365 480 IPR012677 -
Tpr7g1739 629 Gene3D - 228 341 IPR012677 -
Tpr7g1739 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 208 IPR000504 GO:0003723
Tpr7g1739 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 332 IPR000504 GO:0003723
Tpr7g1739 629 SUPERFAMILY RNA-binding domain, RBD 245 343 IPR035979 GO:0003676
Tpr7g1739 629 SMART rrm1_1 500 576 IPR000504 GO:0003723
Tpr7g1739 629 SMART rrm1_1 257 328 IPR000504 GO:0003723
Tpr7g1739 629 SMART rrm1_1 411 472 IPR000504 GO:0003723
Tpr7g1739 629 SMART rrm1_1 133 204 IPR000504 GO:0003723
Tpr7g1739 629 SUPERFAMILY RNA-binding domain, RBD 404 488 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1739 Tpr-Chr7 20002952 20011698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1739 134 373 Eukaryotic Initiation Factors Gene Family AT4G34110 28.099 1.74e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1739 - - mtr:MTR_1g036430 912.524