Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g1738 | ATGTCATCAATGCAGTGTATAATCATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACCGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATACTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACAAGTTGTCGGAGAAGTTTCTCAGACTTCATCACATACTTCATCGACAGAAGTTGTCGAAACTGCTGAGAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCATCTGTCGAAGTTTCTCAGAGTTCGTCAGCTACTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCACGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACCAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGTCATACTGCTGAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCCAGGGCCCTTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTGTTGGCAAAGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGAAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAGTGACATCCCTTATTTGTTGGGGCAACTTCTTACTATCAAGTTCATTGGACCGCACTATTAAGGTCTGGGCTGAAAGTCAAGAGAAAACTTTGCAAGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCAAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGATTATTTGCTAGACAAGAAGTCAGATCAATCGAGAAAGGTCCTGGTGGACTGATCTTCACTGGAGATGGAACTGGTTTGGTGACCGTCTCAAAATGGTCGGAAGAAGCCAAGGTAGAAGCAGCATAG | 1464 | 0.429 | MSSMQCIIMVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESESEENSLTKRAATVWIRNTGDCISKTPLVEPSQTSSPTISTQVVGEVSQTSSHTSSTEVVETAESSSPILSTAVVEVSQSSSVEVSQSSSATLSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAECANVTNLGDEVNSLISQGPWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTVGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLICWGNFLLSSSLDRTIKVWAESQEKTLQVAYSHNVENGIVALNAMTDAEDKTILFCSCQDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEEAKVEAA* | 488 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g1738 | 487 | PRINTS | G protein beta WD-40 repeat signature | 213 | 227 | IPR020472 | - | |
Tpr7g1738 | 487 | PRINTS | G protein beta WD-40 repeat signature | 337 | 351 | IPR020472 | - | |
Tpr7g1738 | 487 | PRINTS | G protein beta WD-40 repeat signature | 377 | 391 | IPR020472 | - | |
Tpr7g1738 | 487 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 318 | 353 | - | - | |
Tpr7g1738 | 487 | SUPERFAMILY | WD40 repeat-like | 191 | 480 | IPR036322 | GO:0005515 | |
Tpr7g1738 | 487 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 18 | 485 | - | - | |
Tpr7g1738 | 487 | Gene3D | - | 286 | 486 | IPR015943 | GO:0005515 | |
Tpr7g1738 | 487 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 194 | 235 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | SMART | WD40_4 | 393 | 437 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | SMART | WD40_4 | 311 | 350 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | SMART | WD40_4 | 187 | 226 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | SMART | WD40_4 | 266 | 303 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | SMART | WD40_4 | 353 | 390 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | ProSiteProfiles | Zinc finger C3H1-type profile. | 156 | 183 | IPR000571 | GO:0046872 | |
Tpr7g1738 | 487 | ProSiteProfiles | Zinc finger C3H1-type profile. | 24 | 45 | IPR000571 | GO:0046872 | |
Tpr7g1738 | 487 | SMART | c3hfinal6 | 156 | 182 | IPR000571 | GO:0046872 | |
Tpr7g1738 | 487 | SMART | c3hfinal6 | 19 | 44 | IPR000571 | GO:0046872 | |
Tpr7g1738 | 487 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 337 | 351 | IPR019775 | - | |
Tpr7g1738 | 487 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 318 | 359 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | Pfam | WD domain, G-beta repeat | 355 | 389 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | Pfam | WD domain, G-beta repeat | 191 | 226 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | Pfam | WD domain, G-beta repeat | 313 | 350 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | SUPERFAMILY | CCCH zinc finger | 158 | 181 | IPR036855 | GO:0046872 | |
Tpr7g1738 | 487 | Gene3D | - | 178 | 285 | IPR015943 | GO:0005515 | |
Tpr7g1738 | 487 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 194 | 226 | - | - | |
Tpr7g1738 | 487 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 360 | 399 | IPR001680 | GO:0005515 | |
Tpr7g1738 | 487 | PANTHER | - | 18 | 485 | IPR044715 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g1738 | Tpr-Chr7 | 19994762 | 20001419 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g1738 | 194 | 437 | Acyl Lipid Metabolism Gene Families | AT3G18860 | 24.615 | 2.43e-10 | 61.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tpr7g1738 | WD40 | 1.1e-05 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g1738 | - | - | mtr:MTR_8g028700 | 494.967 |