Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1738 ATGTCATCAATGCAGTGTATAATCATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACCGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATACTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACAAGTTGTCGGAGAAGTTTCTCAGACTTCATCACATACTTCATCGACAGAAGTTGTCGAAACTGCTGAGAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCATCTGTCGAAGTTTCTCAGAGTTCGTCAGCTACTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCACGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACCAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGTCATACTGCTGAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCCAGGGCCCTTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTGTTGGCAAAGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGAAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAGTGACATCCCTTATTTGTTGGGGCAACTTCTTACTATCAAGTTCATTGGACCGCACTATTAAGGTCTGGGCTGAAAGTCAAGAGAAAACTTTGCAAGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCAAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGATTATTTGCTAGACAAGAAGTCAGATCAATCGAGAAAGGTCCTGGTGGACTGATCTTCACTGGAGATGGAACTGGTTTGGTGACCGTCTCAAAATGGTCGGAAGAAGCCAAGGTAGAAGCAGCATAG 1464 0.429 MSSMQCIIMVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESESEENSLTKRAATVWIRNTGDCISKTPLVEPSQTSSPTISTQVVGEVSQTSSHTSSTEVVETAESSSPILSTAVVEVSQSSSVEVSQSSSATLSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAECANVTNLGDEVNSLISQGPWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTVGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLICWGNFLLSSSLDRTIKVWAESQEKTLQVAYSHNVENGIVALNAMTDAEDKTILFCSCQDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEEAKVEAA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1738 487 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Tpr7g1738 487 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Tpr7g1738 487 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Tpr7g1738 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 353 - -
Tpr7g1738 487 SUPERFAMILY WD40 repeat-like 191 480 IPR036322 GO:0005515
Tpr7g1738 487 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 18 485 - -
Tpr7g1738 487 Gene3D - 286 486 IPR015943 GO:0005515
Tpr7g1738 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Tpr7g1738 487 SMART WD40_4 393 437 IPR001680 GO:0005515
Tpr7g1738 487 SMART WD40_4 311 350 IPR001680 GO:0005515
Tpr7g1738 487 SMART WD40_4 187 226 IPR001680 GO:0005515
Tpr7g1738 487 SMART WD40_4 266 303 IPR001680 GO:0005515
Tpr7g1738 487 SMART WD40_4 353 390 IPR001680 GO:0005515
Tpr7g1738 487 ProSiteProfiles Zinc finger C3H1-type profile. 156 183 IPR000571 GO:0046872
Tpr7g1738 487 ProSiteProfiles Zinc finger C3H1-type profile. 24 45 IPR000571 GO:0046872
Tpr7g1738 487 SMART c3hfinal6 156 182 IPR000571 GO:0046872
Tpr7g1738 487 SMART c3hfinal6 19 44 IPR000571 GO:0046872
Tpr7g1738 487 ProSitePatterns Trp-Asp (WD) repeats signature. 337 351 IPR019775 -
Tpr7g1738 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515
Tpr7g1738 487 Pfam WD domain, G-beta repeat 355 389 IPR001680 GO:0005515
Tpr7g1738 487 Pfam WD domain, G-beta repeat 191 226 IPR001680 GO:0005515
Tpr7g1738 487 Pfam WD domain, G-beta repeat 313 350 IPR001680 GO:0005515
Tpr7g1738 487 SUPERFAMILY CCCH zinc finger 158 181 IPR036855 GO:0046872
Tpr7g1738 487 Gene3D - 178 285 IPR015943 GO:0005515
Tpr7g1738 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 226 - -
Tpr7g1738 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 399 IPR001680 GO:0005515
Tpr7g1738 487 PANTHER - 18 485 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1738 Tpr-Chr7 19994762 20001419 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1738 194 437 Acyl Lipid Metabolism Gene Families AT3G18860 24.615 2.43e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g1738 WD40 1.1e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1738 - - mtr:MTR_8g028700 494.967