Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1736 ATGTCATCAATGCAGTGTATAATCATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACCGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATAGTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACGTGTTGTCGGAGAAGTTTCTCAGACTTCATCACATACTTCATCGACAGAAGTTGTCGAAGAAGTTTCTCAGAGTTCATCACATTCTTTATCGACAGAAGTTGTCGAAGAAGTTTCTCAGAGTTCATCACATTCTTTATCGACAGAAGTTGTCGAAACTGCTGATAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCGTCAGCAATTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCATGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACGAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGCCATACTGCTGAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCGAGGGCCCTTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTATTGGCAAAGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGCAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAGTCACATCCCTTATTTGTTGGGGCAACTTCTTGCTATCAAGTTCATTGGACTGCACTATTAAGGTCTGGGCTGAAAGTCAAGAGAAAACTTTGCAAGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCGAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGATTATTTGCTAGACAAGAAGTCAGATCAATCGAGAAAGGTCCTGGTGGACTGATCTTCACTGGAGATGGAACTGGTTTGGTGACCGTCTCAAAATGGTCGGAAGAAGCCAAGGTAGAAGCAGCATAG 1536 0.4258 MSSMQCIIMVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESESEENSLTKRAATVWIRNSGDCISKTPLVEPSQTSSPTISTRVVGEVSQTSSHTSSTEVVEEVSQSSSHSLSTEVVEEVSQSSSHSLSTEVVETADSSSPILSTAVVEVSQSSSAILSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAECANVTNLGDEVNSLISEGPWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTIGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLICWGNFLLSSSLDCTIKVWAESQEKTLQVAYSHNVENGIVALNAMTDAEDKTILFCSCRDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEEAKVEAA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1736 511 Gene3D - 344 510 IPR015943 GO:0005515
Tpr7g1736 511 PANTHER - 18 509 IPR044715 -
Tpr7g1736 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Tpr7g1736 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515
Tpr7g1736 511 SMART WD40_4 290 327 IPR001680 GO:0005515
Tpr7g1736 511 SMART WD40_4 211 250 IPR001680 GO:0005515
Tpr7g1736 511 SMART WD40_4 417 461 IPR001680 GO:0005515
Tpr7g1736 511 SMART WD40_4 335 374 IPR001680 GO:0005515
Tpr7g1736 511 SMART WD40_4 377 414 IPR001680 GO:0005515
Tpr7g1736 511 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Tpr7g1736 511 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Tpr7g1736 511 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Tpr7g1736 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 250 - -
Tpr7g1736 511 MobiDBLite consensus disorder prediction 93 135 - -
Tpr7g1736 511 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 18 509 - -
Tpr7g1736 511 SMART c3hfinal6 180 206 IPR000571 GO:0046872
Tpr7g1736 511 SMART c3hfinal6 19 44 IPR000571 GO:0046872
Tpr7g1736 511 Gene3D - 197 341 IPR015943 GO:0005515
Tpr7g1736 511 ProSiteProfiles Zinc finger C3H1-type profile. 24 45 IPR000571 GO:0046872
Tpr7g1736 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 423 IPR001680 GO:0005515
Tpr7g1736 511 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Tpr7g1736 511 SUPERFAMILY WD40 repeat-like 215 503 IPR036322 GO:0005515
Tpr7g1736 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 377 - -
Tpr7g1736 511 ProSiteProfiles Zinc finger C3H1-type profile. 180 207 IPR000571 GO:0046872
Tpr7g1736 511 Pfam WD domain, G-beta repeat 215 250 IPR001680 GO:0005515
Tpr7g1736 511 Pfam WD domain, G-beta repeat 337 374 IPR001680 GO:0005515
Tpr7g1736 511 Pfam WD domain, G-beta repeat 379 413 IPR001680 GO:0005515
Tpr7g1736 511 SUPERFAMILY CCCH zinc finger 183 205 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1736 Tpr-Chr7 19981488 19987968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1736 218 461 Acyl Lipid Metabolism Gene Families AT3G18860 26.538 1.67e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g1736 WD40 1.2e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1736 - - mtr:MTR_8g028700 508.064