Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g1736 | ATGTCATCAATGCAGTGTATAATCATGGTCACTAAATGGACAAGAATTGATCGACGAATTATCCCCACAACATGTTATTACTGGTTGAATGGGAGATGCAATCGAAACCCTTGTAGGTTTCTTCACAGCAAACCTCCTATAGTCACCAAGACCGTCAATTGTAATGGAGGAAGGAAGCGATGTTCTGAGTCTGAGTCTGAAGAAAATTCACTTACTAAGCGTGCAGCCACGGTTTGGATTAGGAATAGTGGAGATTGTATTTCTAAGACACCACTTGTTGAGCCTTCTCAGACTTCATCGCCTACCATATCGACACGTGTTGTCGGAGAAGTTTCTCAGACTTCATCACATACTTCATCGACAGAAGTTGTCGAAGAAGTTTCTCAGAGTTCATCACATTCTTTATCGACAGAAGTTGTCGAAGAAGTTTCTCAGAGTTCATCACATTCTTTATCGACAGAAGTTGTCGAAACTGCTGATAGTTCGTCACCTATTTTATCGACAGCAGTTGTCGAAGTTTCTCAGAGTTCGTCAGCAATTTTATCGACAGAATTATGCAAATATTGGATCAACGGAAACTGTGTGCATGGTGATAAATGTCGGGATATGCATTCTTGGTTTTCTGGTGATCGGTTATCAGCAGTAACAAATCTTGAAGGACACAAGAAACTTGTCACAGGAATTACACTTCCAGTTGGGACGAACAAACTTTTCTCTGGAAGTACTGATGGCACAGTTCGGATATGGGACTGCCATACTGCTGAGTGTGCTAATGTGACCAATCTTGGTGATGAAGTCAACTCTTTAATCAGCGAGGGCCCTTGGATTTTTGTTGGTCTATCAAATATTGTCAAGGCATGGAATATTCAGAATGGTTCAGGGTATACTCTTGAAGTGCCTAATGGGCGAGTCCTTGCCATGACTATTGGCAAAGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAAGGGCAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACTTGGCCACTCTAAATCTGTTGTTTGCCTTACTGTCGGATGCCCCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGTATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACACTCAATGGGCATACTGACACAGTCACATCCCTTATTTGTTGGGGCAACTTCTTGCTATCAAGTTCATTGGACTGCACTATTAAGGTCTGGGCTGAAAGTCAAGAGAAAACTTTGCAAGTGGCATATTCGCACAATGTGGAAAACGGCATTGTTGCACTTAATGCGATGACTGATGCAGAAGATAAGACTATACTGTTTTGCTCTTGCCGAGACAATTCAGTTCGTCTGTATGAACTACCATCTTTTTCAGAGAGGGGTAGATTATTTGCTAGACAAGAAGTCAGATCAATCGAGAAAGGTCCTGGTGGACTGATCTTCACTGGAGATGGAACTGGTTTGGTGACCGTCTCAAAATGGTCGGAAGAAGCCAAGGTAGAAGCAGCATAG | 1536 | 0.4258 | MSSMQCIIMVTKWTRIDRRIIPTTCYYWLNGRCNRNPCRFLHSKPPIVTKTVNCNGGRKRCSESESEENSLTKRAATVWIRNSGDCISKTPLVEPSQTSSPTISTRVVGEVSQTSSHTSSTEVVEEVSQSSSHSLSTEVVEEVSQSSSHSLSTEVVETADSSSPILSTAVVEVSQSSSAILSTELCKYWINGNCVHGDKCRDMHSWFSGDRLSAVTNLEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCHTAECANVTNLGDEVNSLISEGPWIFVGLSNIVKAWNIQNGSGYTLEVPNGRVLAMTIGKDTLLAGAEDGVISAWKGSSEANSPFKLVASLLGHSKSVVCLTVGCPNKRLFSGSMDHSIKVWDLDTFECKMTLNGHTDTVTSLICWGNFLLSSSLDCTIKVWAESQEKTLQVAYSHNVENGIVALNAMTDAEDKTILFCSCRDNSVRLYELPSFSERGRLFARQEVRSIEKGPGGLIFTGDGTGLVTVSKWSEEAKVEAA* | 512 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g1736 | 511 | Gene3D | - | 344 | 510 | IPR015943 | GO:0005515 | |
Tpr7g1736 | 511 | PANTHER | - | 18 | 509 | IPR044715 | - | |
Tpr7g1736 | 511 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 218 | 259 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 342 | 383 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | SMART | WD40_4 | 290 | 327 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | SMART | WD40_4 | 211 | 250 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | SMART | WD40_4 | 417 | 461 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | SMART | WD40_4 | 335 | 374 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | SMART | WD40_4 | 377 | 414 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | PRINTS | G protein beta WD-40 repeat signature | 237 | 251 | IPR020472 | - | |
Tpr7g1736 | 511 | PRINTS | G protein beta WD-40 repeat signature | 361 | 375 | IPR020472 | - | |
Tpr7g1736 | 511 | PRINTS | G protein beta WD-40 repeat signature | 401 | 415 | IPR020472 | - | |
Tpr7g1736 | 511 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 218 | 250 | - | - | |
Tpr7g1736 | 511 | MobiDBLite | consensus disorder prediction | 93 | 135 | - | - | |
Tpr7g1736 | 511 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 18 | 509 | - | - | |
Tpr7g1736 | 511 | SMART | c3hfinal6 | 180 | 206 | IPR000571 | GO:0046872 | |
Tpr7g1736 | 511 | SMART | c3hfinal6 | 19 | 44 | IPR000571 | GO:0046872 | |
Tpr7g1736 | 511 | Gene3D | - | 197 | 341 | IPR015943 | GO:0005515 | |
Tpr7g1736 | 511 | ProSiteProfiles | Zinc finger C3H1-type profile. | 24 | 45 | IPR000571 | GO:0046872 | |
Tpr7g1736 | 511 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 384 | 423 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 361 | 375 | IPR019775 | - | |
Tpr7g1736 | 511 | SUPERFAMILY | WD40 repeat-like | 215 | 503 | IPR036322 | GO:0005515 | |
Tpr7g1736 | 511 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 342 | 377 | - | - | |
Tpr7g1736 | 511 | ProSiteProfiles | Zinc finger C3H1-type profile. | 180 | 207 | IPR000571 | GO:0046872 | |
Tpr7g1736 | 511 | Pfam | WD domain, G-beta repeat | 215 | 250 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | Pfam | WD domain, G-beta repeat | 337 | 374 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | Pfam | WD domain, G-beta repeat | 379 | 413 | IPR001680 | GO:0005515 | |
Tpr7g1736 | 511 | SUPERFAMILY | CCCH zinc finger | 183 | 205 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g1736 | Tpr-Chr7 | 19981488 | 19987968 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g1736 | 218 | 461 | Acyl Lipid Metabolism Gene Families | AT3G18860 | 26.538 | 1.67e-10 | 61.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tpr7g1736 | WD40 | 1.2e-05 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g1736 | - | - | mtr:MTR_8g028700 | 508.064 |