Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1730 ATGGATCAAGTATCAGCACAAGGTCGTCCTCTTCCTTTTCTCACTAGAGATCTTCATCTTCATCCTCATCATCAATTCCACACCAACCACCAAACCAATGAAGAAGAACAACAAAGTGGCAATGGCAACTTAAGCCGAGGCCAAAAACGAGAACGAAACAACAACGATGATACTCCCACAGGCGGAGAAGGAAAAGACGATGGAGGCAGTGGAAGTGCGGGAGGAGGTAGTGGTGGTGAGATGGGAAGAAGACCAAGAGGAAGACCAGCAGGTTCTAAAAACAAGCCAAAACCCCCCATCATTATCACGAGAGACAGCGCAAACGCACTCCGATCCCACGTGATGGAGGTCGCGAACGGATGCGACATCATGGAAAGTGTGACGGTCTTTGCACGGAGGAGACAGCGTGGTGTCTGTATCCTCAGTGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCACCTGGTGCGGTAGTCACACTTCACGGAAGATTTGAGATATTATCTTTATCTGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCAGCGTCAGGATTAGCCATATATCTAGCTGGCGGACAAGGACAAGTAGTCGGTGGAAGCGTGGTGGGACCGTTGTTGGCTTCCGGTCCCGTTGTTATCATGGCAGCTTCCTTTGGAAATGCAGCTTATGAAAGGTTGCCTTTAGAAGATGAAGAAACACCAGTGAATGTGCCAGGAAGTGGAGGGTTAGGGTCACCAGGAACTATGGGAACTCCACAACAACAACAGCAACAACTTGTGGCAGATCCTAACACTTCATCACTTTTCCATGGAGGAGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGCTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA 906 0.4967 MDQVSAQGRPLPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNNDDTPTGGEGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGSGGLGSPGTMGTPQQQQQQLVADPNTSSLFHGGVPQNLLNSCQLPAEGYWGGSARPPF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1730 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 301 IPR014476 GO:0003680
Tpr7g1730 301 MobiDBLite consensus disorder prediction 32 48 - -
Tpr7g1730 301 MobiDBLite consensus disorder prediction 49 63 - -
Tpr7g1730 301 ProSiteProfiles PPC domain profile profile. 107 245 IPR005175 -
Tpr7g1730 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 6 301 - -
Tpr7g1730 301 MobiDBLite consensus disorder prediction 233 270 - -
Tpr7g1730 301 MobiDBLite consensus disorder prediction 250 270 - -
Tpr7g1730 301 MobiDBLite consensus disorder prediction 26 101 - -
Tpr7g1730 301 CDD DUF296 111 178 IPR005175 -
Tpr7g1730 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 242 - -
Tpr7g1730 301 Gene3D - 110 241 - -
Tpr7g1730 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 223 IPR005175 -
Tpr7g1730 301 PIRSF ESCAROLA 15 301 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1730 Tpr-Chr7 19926828 19928525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1730 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 63.665 2.53e-87 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1730 - - gmx:100816243 388.652