Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1717 ATGAGTATTGTGTATACTCAAGCTCTTGATTACTCCGACAGTGGTTCAAGTTTGAACTCAGAAATGGATTCAAAATTTGGTTACTCACAAACACAACAACATTGTCACCAAAACAATTCCGGTTTATCGCGGTACAATTCGGCTCCAAGCTCATTGCTTACAAGCCTTGGGGACACAACCATTGGTAATTTTTTAAATGATAATCAGCATCAGAGTCAACATTATTCTTCATCTACAAGTTCAGAAATGGAAACCATATTAACAAATTCTGAACCTTTGTATGAATTCAAACCAATGAAAGAAGAAGAAAATAACCCTTTTTCAAATGGATTATTACAATACAATGGTTACTCTTATGGTTCACAAAATCAGATAATTTATCAAACTCAGCAGAATCAAGGATTGGCAAATGGTTTTGATGGTTCATTTAGTGCAATGAGTTCCTTGGATTCTTCAAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGAGTTTTTCTCCAATTATTCAATTAATAATGGAAGTGTTAGTGGACAAGCTATTACATCAACTAGTGGATTGCATGGTACTTTGAATTTCTCATCAAGATCATCCTCTAGCTCTATCAAGATGCCACTGATTATAGAAAATGAACATGAAAATCTTCAAGCAAATGTTATTAAAAGTAGAAACATTGATAATGGTATCACTAAATGTTACATGCCTAGCTTCACCAATGACTATAATTGGGATAGTTCTACATTTAGTGCTCCAAAAAATGCTACTAATAATGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGGATGTAGACTTTAGATACCAAAAACATGGTTTGAGCCACCATTTGAGTCTTCCTAGCTCTTCTAGTAAGATGACAACTATGGAGAAGTATTTACACCTTCAAGGATCAGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCTACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATAAAAAAGTTGCAAGATCTTTTCCCTAATTCAGATAAGCAAACTAGCACAGCTGATATGTTGGATGAAGCAGTTCAGTACATTAAAGATCTGAGGAAACAACTTAAGAAACTAACAGACACCAAGGCAAAGTGCACATGTACAAGTAATTAG 1173 0.3495 MSIVYTQALDYSDSGSSLNSEMDSKFGYSQTQQHCHQNNSGLSRYNSAPSSLLTSLGDTTIGNFLNDNQHQSQHYSSSTSSEMETILTNSEPLYEFKPMKEEENNPFSNGLLQYNGYSYGSQNQIIYQTQQNQGLANGFDGSFSAMSSLDSSNNCSNLIRQKSSPAEFFSNYSINNGSVSGQAITSTSGLHGTLNFSSRSSSSSIKMPLIIENEHENLQANVIKSRNIDNGITKCYMPSFTNDYNWDSSTFSAPKNATNNGEFMFSTSNALETQDVDFRYQKHGLSHHLSLPSSSSKMTTMEKYLHLQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQTSTADMLDEAVQYIKDLRKQLKKLTDTKAKCTCTSN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1717 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
Tpr7g1717 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 383 IPR036638 GO:0046983
Tpr7g1717 390 SMART finulus 327 377 IPR011598 GO:0046983
Tpr7g1717 390 Gene3D - 323 389 IPR036638 GO:0046983
Tpr7g1717 390 Coils Coil 361 388 - -
Tpr7g1717 390 CDD bHLH_AtbHLH_like 326 378 IPR045239 -
Tpr7g1717 390 Pfam Helix-loop-helix DNA-binding domain 327 371 IPR011598 GO:0046983
Tpr7g1717 390 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 389 - -
Tpr7g1717 390 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1717 Tpr-Chr7 19728380 19732742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1717 33 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.501 1.66e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g1717 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1717 - - cam:101493473 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4507 3 50216713 50219505 Tpr7g1717 7 19728380 19732742 ECH
Tpr7g1717 7 19728380 19732742 Tpr7g1717 7 19728380 19732742 ECH