Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1716 ATGGACAAGGGACCGCCTCCTACCCTCTTTGTTAATGATGGTTCATTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAGAGGGGGAAAAATGCCAAACCAGAGGATTCTAAACCAATTAAAGTTATTTCCGGACCTCTGACTCCTAAACCATCCAATAGTAAGGGTAATGATGCAAAGAAATCTTCCCAGGGTGGTTCCAGTGGCAAACTGGCTTTCAGTTTGAAACAAAAGTCAAAGCTAGTGCCGCCCCCTGTTAAGTTGGCTGATGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAAATGATGCCCCGTTAAAACGGCAAAAATTGGGTCAGGATGATGGCATTGAGCAATCATCAAGACAACTTGATGTTGCACCTCCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTCGCAAGTTTTGTGGCTAAAAATGGAAGAACATTTGAAGATGTTACACGGCAAAAAAACCCCGGGGACACACCTTTCAAGTTTTTATTTGATGTTAAATGTTCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAGGAGAAGGCCCTTTCACAGTACAAAGAACCACAAGCAAATCATAATGTTGGGACAAGCATTTCATCTTCCAGACCAACAAATGGTCCTCCGAGATCATCCCAGCAGCATTCAACTTACCAAATCCCCGCTTCTGCTTTATATGATAGTGAAGTATCAAGGGCTTCTGGATCTTCAGTTCAAGCATTTTCAGTTGGAAGCTCGGATGAGCCCGGTGGATCATCAAATGCTAGTTCTTTAGCACTAATGGAGTTTTACATGAAGAAAGCTGCACAGGAAGAAAAGTTTAAACAACCTAAGTATTCAAAAGACGAGATGCCCCCTCCTCCTTCTCTTCAACAAGGTTCAACATTTGATGCATCAGCTTCAGCGAAAAAAGGCCATCACATGGGTGATTATATTCCTCAGCAAGAACTTGAAAAGTTCTTGGCTAGCTGTAACGATGCAGCAGCAATGAAAGCTGCAAAGGAGGCTGCGGAGAAGGCCAAAATTCAGGCTGATAATGTGGGCCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGCTCTAGGAAGGGTATTTCAGATCCCATCATGGCTGGCAATGTTAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAGGATGACATCTACGAGCAATACAAAAAACGAATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1320 0.4402 MDKGPPPTLFVNDGSFMERFRQLQQEQERGKNAKPEDSKPIKVISGPLTPKPSNSKGNDAKKSSQGGSSGKLAFSLKQKSKLVPPPVKLADDDEDEIDAGYVSNDAPLKRQKLGQDDGIEQSSRQLDVAPPPPSDPTVKKVADKLASFVAKNGRTFEDVTRQKNPGDTPFKFLFDVKCSDYKYYEHRLAQEEKALSQYKEPQANHNVGTSISSSRPTNGPPRSSQQHSTYQIPASALYDSEVSRASGSSVQAFSVGSSDEPGGSSNASSLALMEFYMKKAAQEEKFKQPKYSKDEMPPPPSLQQGSTFDASASAKKGHHMGDYIPQQELEKFLASCNDAAAMKAAKEAAEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1716 439 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Tpr7g1716 439 MobiDBLite consensus disorder prediction 1 139 - -
Tpr7g1716 439 ProSiteProfiles G-patch domain profile. 356 403 IPR000467 GO:0003676
Tpr7g1716 439 Pfam G-patch domain 357 400 IPR000467 GO:0003676
Tpr7g1716 439 SUPERFAMILY Surp module (SWAP domain) 123 193 IPR035967 GO:0003723|GO:0006396
Tpr7g1716 439 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Tpr7g1716 439 MobiDBLite consensus disorder prediction 195 236 - -
Tpr7g1716 439 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Tpr7g1716 439 MobiDBLite consensus disorder prediction 22 38 - -
Tpr7g1716 439 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 439 IPR040169 -
Tpr7g1716 439 MobiDBLite consensus disorder prediction 48 75 - -
Tpr7g1716 439 Gene3D Surp module 114 196 IPR035967 GO:0003723|GO:0006396
Tpr7g1716 439 MobiDBLite consensus disorder prediction 197 236 - -
Tpr7g1716 439 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 439 - -
Tpr7g1716 439 SMART G-patch_5 354 401 IPR000467 GO:0003676
Tpr7g1716 439 MobiDBLite consensus disorder prediction 286 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1716 Tpr-Chr7 19702992 19708424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1716 342 439 C2H2 Transcription Factor Family AT5G26610 32.743 8.43e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1716 K13096 - gmx:100786213 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1716 7 19702992 19708424 Tpr7g1716 7 19702992 19708424 ECH