Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1708 ATGACAGATCCTCAATCTAACTTTTTTGATGAATGGTTCAACTTCATGCTCCTCCACCCTCATAATCATAATCATAATCAATACTCTTCTTCTTCTTCTTCTAGTCAACAAACCAATAACATGTTTGATATTCAATCTCATAATCAACCCTCATCATCTCCCTTAACCATAAATCCTCCTTCTCCTCCTCTTAGAGAAGCTCTTCCTCTCATTAACAAATTAAGTCTCATAAATCATAATCATCAACAACAACAACAAAATGAACCCTCAAACACAACAATAGAACAAGAAGAATACAAAAGAATATTGGAAAGGCATGGTGATGACGATGTTGGTGATGAAAGTGTTACTTTTTCCCTACAAATAGGCCTTCCTAGAATGAATAGTAGTTCTTCTTCTTCTGATCTTGGAACAAGGATGGTCTCAAATTGTATACAAATGGCTGAAAAAGAAGAAACTAATATGATTTCTGAAAACCCTTTAGATAAATTGAACAAGGGTCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACACAATTTTCATGTCCTGTGTGCTCTAAAACTTTCAATAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGTTAAGGCTTCCATGTTTTTGTTGTGCACAAGGTTGCAAGCACAACATTGATCACCCTAGAGCAAAGCCTCTTAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATTAAACCTTATTTGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGTTCAGATTTTAAACATAAAAGGTCCCTTAAAGATCATATTAAAGCTTTTGGTTACGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGCTGGTTCAGAAATTGAACATGACGGTGGAAGTTCAATGTGA 1038 0.3545 MTDPQSNFFDEWFNFMLLHPHNHNHNQYSSSSSSSQQTNNMFDIQSHNQPSSSPLTINPPSPPLREALPLINKLSLINHNHQQQQQNEPSNTTIEQEEYKRILERHGDDDVGDESVTFSLQIGLPRMNSSSSSSDLGTRMVSNCIQMAEKEETNMISENPLDKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAQGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYLCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAGSEIEHDGGSSM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1708 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 288 IPR013087 -
Tpr7g1708 345 Pfam C2H2-type zinc finger 184 203 - -
Tpr7g1708 345 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 340 - -
Tpr7g1708 345 Gene3D Classic Zinc Finger 227 315 - -
Tpr7g1708 345 PANTHER ZINC FINGER PROTEIN WIP2 1 340 IPR043584 GO:0003700|GO:0010468
Tpr7g1708 345 SUPERFAMILY beta-beta-alpha zinc fingers 184 288 IPR036236 -
Tpr7g1708 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Tpr7g1708 345 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Tpr7g1708 345 Gene3D Classic Zinc Finger 183 206 - -
Tpr7g1708 345 SMART c2h2final6 184 206 IPR013087 -
Tpr7g1708 345 SMART c2h2final6 268 288 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1708 Tpr-Chr7 19546051 19549819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1708 1 338 C2H2 Transcription Factor Family AT3G57670 53.763 5.36e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr7g1708 zf-C2H2_6 9.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1708 - - gmx:100794446 520.39