Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1701 ATGGGTCGTGGTGGTGGAAAAGTTACCTTGAAACACATTCAAAATGAGAAAGTTCGGAAATCATCTTTCATTCAGAGAAGGAAAGGATTAACAAAAAAAGTGTCTAAATTTTCTAAAAACTTTAGAGTTGAAGTTTGCTTAATTGTGTGCGATGGTGATGGTGATAGTAAACCAATGACTTGGCCACAAGACTTCTCAACTCTACAATCCATGCTTACAAAATATGAGCAACAAAAGATTGAGACGACTCCAAAGAAATTTGATATGCAAGACTATTTTGCAAATAAGAAGAATATGGTTGAAGCTGAGATTTTGAACGTGCGCAAAAAGATCGTGATGAACAAATATCAAACATGGGGTCGACCTTTCAATAACTTGGAAATGGAGCAACTCAGAAGTTTTGTTGATATTGTAGATCTCAAGATTGAAGCCTGTAATCAAAGAATCAACATGCTGAAAAATATGCAACAAAGTGATCAGACCAATTTCATGCAAAATGTGGGTTCAGAGAATGTTGCATCTCCACTATCAAGTCAACCTGGTGATCTGATAAACCCCCTCATTGATATCAGTGAGATGATTGATTTCAGTGATCTTATGGAGTGGGATGAAATAATGGCTCAGGAGAATGATTTATCCTCCCATTCACATTCAAGTCAAGATGTGATGCATAGCATTCCTCAAATGCAACATGAATTTGGAAAGTTGGATGATCTAGTGGATAAATCTGATCAGGAATGGGCTACTCAGCTTGAGGATTTTGATGATTGGGCAGTCAATAAACTAAATAATGGTGATGGTTGGGTTAAGCAACCTTATATGTTTGAATGCCAAGATTTTTGCTTTTTATCTGAAATCGAACAACAATGTGCAACTTTGGATGCCTTTTACCAACCAAGATATGGATTTTAA 912 0.3629 MGRGGGKVTLKHIQNEKVRKSSFIQRRKGLTKKVSKFSKNFRVEVCLIVCDGDGDSKPMTWPQDFSTLQSMLTKYEQQKIETTPKKFDMQDYFANKKNMVEAEILNVRKKIVMNKYQTWGRPFNNLEMEQLRSFVDIVDLKIEACNQRINMLKNMQQSDQTNFMQNVGSENVASPLSSQPGDLINPLIDISEMIDFSDLMEWDEIMAQENDLSSHSHSSQDVMHSIPQMQHEFGKLDDLVDKSDQEWATQLEDFDDWAVNKLNNGDGWVKQPYMFECQDFCFLSEIEQQCATLDAFYQPRYGF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1701 303 Gene3D - 15 100 IPR036879 GO:0003677|GO:0046983
Tpr7g1701 303 SUPERFAMILY SRF-like 5 80 IPR036879 GO:0003677|GO:0046983
Tpr7g1701 303 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Tpr7g1701 303 PANTHER PROTEIN, PUTATIVE-RELATED 5 241 - -
Tpr7g1701 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 54 IPR002100 GO:0003677|GO:0046983
Tpr7g1701 303 PANTHER MADS BOX PROTEIN 5 241 - -
Tpr7g1701 303 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1701 Tpr-Chr7 19456847 19458415 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1701 1 148 Type I MADS-box Gene Family AT5G55690 30.065 2.29e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr7g1701 SRF-TF 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1701 - - cam:101509886 217.238