Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1664 ATGGCACTTTCACCACCACATAAACGCCGTAAACACAACAAAGACGTAAAATTCACAACTCATTTCGCTCAACTTTCGTTGACAACACGTGCGCATTACCAAACTCTGTTTGAAGAATCAAGAATTTGTTTTACTGAGAACAAGAACTATAAGGAATTGTTCCTGCGTCTGCTTCCAAAACTCCGCAAAATTTGTATACATTTTAAACTATATAAGTTTGAGAATGATCTTGTTCCTCTACAATTTGAACAACAAGATGTTTCAACAAACCTCAAATTGGAATCAATCCTAACTAGGAGGGTACTGCAAGAAAAAGTTGATTGTTCAATTTGTCTATCTACTCCTTCTCATGCACTAATCACAAGATGTACTCATATTTTCTGCCGAAACTGCATCAGAAAATGGTTCGCTTGTGCCAGAAACAAAGGTTTATGTCCTTATTGTAGAGGTTTACTCACTATAGATGACATGTTCTCCGAAACAAGGCCAGATACTAAGCTGGAAATTCTGATGAAACTTCTGCGACAAGATACCTCTACCAATTCAAAGTCGGTCATATTTACACGTTATGACGATGCACTTTGCTATTTTCATGTTCATTTGCATCATGCTGGTTTCAATTGTCTTATCTATACTACCAAAAAAATGAAATACTGTGAAAATAGTATCAAGAAATTTGAAAACAGTGATGGACCAGTAGTCTTGTTGGTCGACTTTGAGACTGCTCGCAGAAAACAAATTCTCATAAATGCTGAATGCAGAGTCTTTCTGTTAGATGCATGTAGAAAATCTACGGAAGAAGAGTTGGTCGCTCGTGTTACACAGCCGGTGTCTGTTTCAAGATTGATATCTGAAAACACAATTGAAGATAAAATACTCTCGTTGGATGAGATGTTTACTGAAACCGACACTTTGGATTTCTATGATGACAAGGTCCTAAGATATTTACTGGATGAAGATTCTACGATATGA 972 0.3663 MALSPPHKRRKHNKDVKFTTHFAQLSLTTRAHYQTLFEESRICFTENKNYKELFLRLLPKLRKICIHFKLYKFENDLVPLQFEQQDVSTNLKLESILTRRVLQEKVDCSICLSTPSHALITRCTHIFCRNCIRKWFACARNKGLCPYCRGLLTIDDMFSETRPDTKLEILMKLLRQDTSTNSKSVIFTRYDDALCYFHVHLHHAGFNCLIYTTKKMKYCENSIKKFENSDGPVVLLVDFETARRKQILINAECRVFLLDACRKSTEEELVARVTQPVSVSRLISENTIEDKILSLDEMFTETDTLDFYDDKVLRYLLDEDSTI* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1664 323 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
Tpr7g1664 323 SUPERFAMILY RING/U-box 99 155 - -
Tpr7g1664 323 ProSiteProfiles Zinc finger RING-type profile. 108 149 IPR001841 -
Tpr7g1664 323 SMART ring_2 108 148 IPR001841 -
Tpr7g1664 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 160 IPR013083 -
Tpr7g1664 323 Pfam Zinc finger, C3HC4 type (RING finger) 105 150 - -
Tpr7g1664 323 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 17 297 - -
Tpr7g1664 323 Gene3D - 17 311 IPR027417 -
Tpr7g1664 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1664 Tpr-Chr7 18926662 18928467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1664 104 297 RAD5 or RAD16-like Gene Family AT5G05130 34.529 2.66e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1664 K15711 - mtr:MTR_8g038520 357.066