Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1662 ATGGCACTTTCACCACCACAGAAACGCCGTAAACACAACAAAGACGTAAAATTCACAACTCATTTCGCTCAACTTTCGTTGACAACACGTGCGCATTACCAAACTCTGTTTGAAGAATCAAGAATTTGTTTTACTGAGAAGAATTATAAGGAATTGTTCCTGCGTCTGCTTCCCAAACTCCGCAAAATTTGTATACATTTTAAACTATATAACTTTCAGAATGATCTTGTTCCTCTACGATTTGAACAACAAGATGTTTCAACAAACCTCAAATTGGAATCAATCCTAACTAGGAGGGTACTGCAAGAAAAAGTTGATTGTTCAATTTGTCTATCTACTCCTTCTCATGCACTAATCACAAGATGTACTCATATTTTCTGCCGAAACTGCATCAGAAAATGGTTCGCTTGTGCCAGAAACAAAGGTTTATGTCCTTATTGTAGAGGTTTACTCACTATAGATGACATGTTCTCCGAAACAAGGCCAGATACTAAGCTGGAAATTCTGATGAAACTTCTGCGACAAGATACCTCTACCAATTCAAAGTCGGTCATATTTACACGTTATGACGATGCACTTTGCTATTTTCATGTTCATTTGCATCATGCTGGTTTCAATTGTCTTATCTATACTACCAAAAAAATGAAATACTGTGAAAATAGTATCAAGAAATTTGAAAACAGTGATGGACCAGTAGTCTTGTTGGTCGACTTTGAGACTGCTCGCAGAAAACAAATTCTCATAAATGCTGAATGCAGAGTCTTTCTGTTAGATGCATGTAGAAAATCTACGGAAGAAGAGTTGGTCGCTCGTGTTACACAGCCGGTGTCTGTTTCAAGATTGATATCTGAAAACACAATTGAAGATAAAATACTCTCGTTGGATGAGATGTTTACTGAAACCGACACTTTGGATTTCTATGATGACAAGGTCCTAAGATATTTACTGGATGAAGATTCTACGATATGA 969 0.3684 MALSPPQKRRKHNKDVKFTTHFAQLSLTTRAHYQTLFEESRICFTEKNYKELFLRLLPKLRKICIHFKLYNFQNDLVPLRFEQQDVSTNLKLESILTRRVLQEKVDCSICLSTPSHALITRCTHIFCRNCIRKWFACARNKGLCPYCRGLLTIDDMFSETRPDTKLEILMKLLRQDTSTNSKSVIFTRYDDALCYFHVHLHHAGFNCLIYTTKKMKYCENSIKKFENSDGPVVLLVDFETARRKQILINAECRVFLLDACRKSTEEELVARVTQPVSVSRLISENTIEDKILSLDEMFTETDTLDFYDDKVLRYLLDEDSTI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1662 322 SUPERFAMILY RING/U-box 98 154 - -
Tpr7g1662 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 159 IPR013083 -
Tpr7g1662 322 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Tpr7g1662 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 294 IPR027417 -
Tpr7g1662 322 Pfam Zinc finger, C3HC4 type (RING finger) 104 149 - -
Tpr7g1662 322 SMART ring_2 107 147 IPR001841 -
Tpr7g1662 322 ProSiteProfiles Zinc finger RING-type profile. 107 148 IPR001841 -
Tpr7g1662 322 Gene3D - 17 311 IPR027417 -
Tpr7g1662 322 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 17 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1662 Tpr-Chr7 18898308 18900106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1662 103 296 RAD5 or RAD16-like Gene Family AT5G05130 34.529 3.55e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1662 K15711 - mtr:MTR_8g038520 358.221