Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1661 ATGGCACTTTCACCACCACAGAAACGCCGTAAACACAACAAAGACGTAAAATTCACAACTCATTTCGCTCAACTTTCGTTGACAACACGTGCGCATTACCAAACTCTGTTTGAAGAATCAAGAATTTGTTTTACTGAGAAGAATTATAAGGAATTGTTCCTGCGTCTGCTTCCCAAACTCCGCAAAATTTGTATACATTTTAAACTATATAACTTTCAGAATGATCTTGTTCCTCTACGATTTGAACAACAAGATGTTTCAACAAACCTCAAATTGGAATCAATCCTAACTAGGAGGGTACTGCAAGAAAAAGTTGATTGTTCAATTTGTCTATCTACTCCTTCTCATGCACTAATCACAAGATGTACTCATATTTTCTGCCGAAACTGCATCAGAAAATGGTTCGCTTGTGCCAGAAACAAAGGTTTATGTCCTTATTGTAGAGGTTTACTCACTATAGATGACATGTTCTCCGAAACAAGGCCAGATACTAAGCTGGAAATTCTGATGAAACTTCTGCGACAAGATACCTCTACCAATTCAAAGTCGGTCATATTTACACGTTATGACGATGCACTTTGCTATTTTCATGTTCATTTGCATCATGCTGGTTTCAATTGTCTTATCTATACTACCAAAAAAATGAAATACTGTGAAAATAGTATCAAGAAATTTGAAAACAGTGATGGACCAGTAGTCTTGTTGGTCGACTTTGAGACTGCTCGCAGAAAACAAATTCTCATAAATGCTGAATGCAGAGTCTTTCTGTTAGATGCATGTAGAAAATCTATCGAAGAAGAGTTGGTCGCTCGTGTTACACAGCCGGTGTCTGTTTCAAGATTGATATCTGAAAACACAATTGAAGATAAAATACTCTCGTTGGATGAGACGTTTACTGAAACCGACACTTTGGATTTCTATGATGACCAGGTCCTAAGATATTTACTGGATGAAGATTCTACGATATGA 969 0.3695 MALSPPQKRRKHNKDVKFTTHFAQLSLTTRAHYQTLFEESRICFTEKNYKELFLRLLPKLRKICIHFKLYNFQNDLVPLRFEQQDVSTNLKLESILTRRVLQEKVDCSICLSTPSHALITRCTHIFCRNCIRKWFACARNKGLCPYCRGLLTIDDMFSETRPDTKLEILMKLLRQDTSTNSKSVIFTRYDDALCYFHVHLHHAGFNCLIYTTKKMKYCENSIKKFENSDGPVVLLVDFETARRKQILINAECRVFLLDACRKSIEEELVARVTQPVSVSRLISENTIEDKILSLDETFTETDTLDFYDDQVLRYLLDEDSTI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1661 322 SUPERFAMILY RING/U-box 98 154 - -
Tpr7g1661 322 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Tpr7g1661 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 159 IPR013083 -
Tpr7g1661 322 Pfam Zinc finger, C3HC4 type (RING finger) 104 149 - -
Tpr7g1661 322 Gene3D - 17 310 IPR027417 -
Tpr7g1661 322 SMART ring_2 107 147 IPR001841 -
Tpr7g1661 322 ProSiteProfiles Zinc finger RING-type profile. 107 148 IPR001841 -
Tpr7g1661 322 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 17 296 - -
Tpr7g1661 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 294 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1661 Tpr-Chr7 18892672 18894487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1661 103 296 RAD5 or RAD16-like Gene Family AT5G05130 34.529 1.43e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1661 K15711 - mtr:MTR_8g038520 350.517