LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g1622	ATGAGATATCTGCGACAAAAAACAATAAATGCTCAAGAACAAGAAAAAATAAGGAACCATGCGAAAGTTATTAGAGCAGCGTACCTCTTTAACACAATGCAGACAAGGAGGTATGAAGTGTTCTTAAGCTTCAGAGGCGAAGACACACGTGCTTCCTTCACTTCACATCTATATGCTTCACTTCAAAACAATGGAATCATCGTTTTTAAGGACGATGATTCACTTCAAAGAGGAGATCACATTTCAACATCACTACTGGAAGCAATCGAACAATCTAAAATTGCTGTTATTGTTTTTTCAAAGAATTATTCAGATTCAGGTTGGTGTTTGAATGAGTTGGTGAAAATAATAGAGTGTCACAGAACCATAGGACAAACACTACTGCCAGTGTTCTATGATGTTGATCCATCGGAAGTACGTCATCAAACTGGTGAGTTTGGAAAAGCGTTTAGTCTCTTGAGTAGGATTTCAAAGAAGAAAGACATTCTCAAATGGAGAGATGCTCTTCGTGAGGCTGCTTCCCTTGCTGGTTTTGTAGTTCTAAATTCCAGGAATGAAAGGGAGGCTATCGATCATGTTGTAGAAAAGGTTACTCTTTTGCTTGACAAGACAGACTTATTTGTTGCTGATAATCCCGTGGGAGTAGAATCTCGAGTGCAAGATACAATTCAACTTCTAGACATCCAACAATCAAATGATGTTCTATTACTAGGGATGTGGGGTATGGGGGGAACCGGTAAAACAACCATTGCAAAAGCCGTTTACAACAAAATTGGCCGCGATTTTGAAGGTAGGAGTTTCCTTGAAAATATTAGGGAAACTTGGGAGCAAATTGCTGGAAAAGCGCCTTTACAAGAACAACTTTTGTTTGATATCTTCAAAGAAAAAACAACCAAGATACAAAGCATTGAGTCTGGGAAAATTACATTGAAGGAAAGGCTCTGTAATAAAAGAGTACTTCTCGTACTTGATGATGTGAATAGTTTAGACCAACTAAATGCATTGTGTGGAAGTCGTAAATGGTTTGGTTCAGGAAGTAGAATAATAATCACAACTAGAGATGAAAATATACTTAGAGGGAATAGAGTTGACAAAGTATGCACAATAAAAGAATTGAATGAAAACGAATCAATTGAGCTTTTTAGTTGGAATGCATTCAAGCAAGCGAGTCCGAAAAAAGATTTTGCTGAAATATCCAGAAAAATTGTTGAGTACTCTGGAGGATTGCCACTAGCTCTGGATGTCCTTGGTTCCTATTTGTTTGACAGGGGAGTAGCAGATTGGAAAAGTGTAATGGAGAAAATCAAAGTAATTCCCAATGATCAAGTACAGCGGAAGTTAAAAATAAGCTATGATGGTTTAAAGGACGATACTGAAAAAGAAATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACCGAAATGATGTAATACTCATATTAAATGGCTGTGGACTTTTTGCAGAAATCGGAATAAGTGTCCTTGTTGAGAGAAGCCTTGTAACTGTCAGTGATAATAACAAGCTTGGAATGCATGATTTGTTACGAGATATGGGTAGAGCAATCATTCGTGAACAATCGCCGAAGGAGCTTGGGGAGCGTAGCAGGCTATGGTTTCACGAAGATGTGCTTGGTGTTTTATTTGAACGAACTGGAACAAAAGCAGTTGAGGGACTAACTTTGAAGTTTCCAATAGATAGTTCAGAATCTTTTAGTACTGAAGCATTTAAGAAGATGAAGAGACTCAGATTACTTCAACTTACTAGTGTAAGACTTGATGGAGATTTCGAATATATTTCAAGAAATCTAAGATGGCTGTGTTGGAATGGATTTCCTTTAACAAGCATACCGTCAAACTTTTATCAAGGAAATTTAGTTTCCATTGAATTAGAAAACAGCAATGTCAGACGTCTGTGGAGAGAGACTCAAAGGTTGGAGATGCTGAAGATCCTAAACCTTAGTCATTCTCATGATCTGACACAGACCCCAGACTTCTCAAATTTGCCTAATCTTGAAAAGCTAATACTCGCAGATTGTAAAATGTTGTCTGAGATTTCCAATAGTATTGGAGATCTCAAAAAAATTCTTCTGATCAGTTTGGAAGACTGTATTAGCCTCCGTAGCCTTCCGAGAAGCATCTATAAGTTGAAATCTTTGAAAACTCTCAATATATCCGGTTGTTCAATGATTGACAAGTTAGAAGATGACTTGGAACATATGGACTCCTTAACCAACCTGATTGCAAATAACACTGCAATAACAAGAGTGCCATTTTCAATAGTAAGGTCAAAAAGCATTGGATATATTTGTCTGTGCGGTTATGAAGGATTCTCAAATGACGTGTTTCCATCTATAATTTGGTCTTGGATGTCACCAACAAATACTCTCCCATCCCCATTTCATACATCTAATTTGTCATCTCTTGTTCCTTTAGATGTATCACACAGTAGTTCCGACTCACTATCATCGATTTCCATGCACCTTCCAAGTCTTCGAAGTCTTTGGGTGGAGTGCAGCTCAGAACTTCAACTTTCTCATGATGCAGCAATAATTTTGGGTGCCTTAAATGCCACAAATTATAAGGAGTTGGAACCAACTGCAACTACGTCACAAGCATCAAATATGACTACTTCTTCACAAGTATCAAAACATTCCCCAAAGTCTCTTTTAATTCAAATCGGAATGAATTGCCAAGTCACTAATATTCTGAAAGAGATCATTTTACAGAATATGGATGTCAGTGGGACTGGTGGTTGTTTCCTCCCCGGTGATAGTTATCCAAATTGGTTTACCTTTAATTCTGAAGGATCTTCTGTAACTTTTCGAGTCCCTCAAGTGGTAGGGCGTAACTTGAAGACAATAATGTGCATTGTCTCTACTTCATCCCGAGATAACATAACATCAAGTGGCCTTAAAAACATGTTGGTGAAAAATTACACAAAGGCCACCATTCAACTTTATAAGGGAGAGGCATTAATCTCCTCTGAAGATGAGGAGGGGCAGAGGCTAGTTTCTAGTATAGAACCTGGTAACAAAGTGGAGGTTGTTGTTGTTTTCGAGAATGGTTTCATTACGAAAAAGACAACAGTTTATCTCGTATATGATGAACCCATTGACAGAACTTTGAATCTATATCATTTACCAGATTTGAATGCCAGTTCTTGTAGTGATGATGAAAATGAATGCATTGGTAAGAGGATCTCTACTCGAGAGGAGTCCACTGATGACTTCAATCAAAACAGAAAGAAGAAAAATAAATTCTTATGTTGCTTAAGTTTCTAG	3285	0.376	MRYLRQKTINAQEQEKIRNHAKVIRAAYLFNTMQTRRYEVFLSFRGEDTRASFTSHLYASLQNNGIIVFKDDDSLQRGDHISTSLLEAIEQSKIAVIVFSKNYSDSGWCLNELVKIIECHRTIGQTLLPVFYDVDPSEVRHQTGEFGKAFSLLSRISKKKDILKWRDALREAASLAGFVVLNSRNEREAIDHVVEKVTLLLDKTDLFVADNPVGVESRVQDTIQLLDIQQSNDVLLLGMWGMGGTGKTTIAKAVYNKIGRDFEGRSFLENIRETWEQIAGKAPLQEQLLFDIFKEKTTKIQSIESGKITLKERLCNKRVLLVLDDVNSLDQLNALCGSRKWFGSGSRIIITTRDENILRGNRVDKVCTIKELNENESIELFSWNAFKQASPKKDFAEISRKIVEYSGGLPLALDVLGSYLFDRGVADWKSVMEKIKVIPNDQVQRKLKISYDGLKDDTEKEIFLDIACFFIGMDRNDVILILNGCGLFAEIGISVLVERSLVTVSDNNKLGMHDLLRDMGRAIIREQSPKELGERSRLWFHEDVLGVLFERTGTKAVEGLTLKFPIDSSESFSTEAFKKMKRLRLLQLTSVRLDGDFEYISRNLRWLCWNGFPLTSIPSNFYQGNLVSIELENSNVRRLWRETQRLEMLKILNLSHSHDLTQTPDFSNLPNLEKLILADCKMLSEISNSIGDLKKILLISLEDCISLRSLPRSIYKLKSLKTLNISGCSMIDKLEDDLEHMDSLTNLIANNTAITRVPFSIVRSKSIGYICLCGYEGFSNDVFPSIIWSWMSPTNTLPSPFHTSNLSSLVPLDVSHSSSDSLSSISMHLPSLRSLWVECSSELQLSHDAAIILGALNATNYKELEPTATTSQASNMTTSSQVSKHSPKSLLIQIGMNCQVTNILKEIILQNMDVSGTGGCFLPGDSYPNWFTFNSEGSSVTFRVPQVVGRNLKTIMCIVSTSSRDNITSSGLKNMLVKNYTKATIQLYKGEALISSEDEEGQRLVSSIEPGNKVEVVVVFENGFITKKTTVYLVYDEPIDRTLNLYHLPDLNASSCSDDENECIGKRISTREESTDDFNQNRKKKNKFLCCLSF*	1095

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g1622	1094	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	44	1035	-	-
	Tpr7g1622	1094	Pfam	TIR domain	38	197	IPR000157	GO:0007165
	Tpr7g1622	1094	PRINTS	Disease resistance protein signature	236	251	-	-
	Tpr7g1622	1094	PRINTS	Disease resistance protein signature	313	327	-	-
	Tpr7g1622	1094	PRINTS	Disease resistance protein signature	406	420	-	-
	Tpr7g1622	1094	PRINTS	Disease resistance protein signature	715	731	-	-
	Tpr7g1622	1094	SUPERFAMILY	"Winged helix" DNA-binding domain	442	548	IPR036390	-
	Tpr7g1622	1094	Gene3D	Ribonuclease Inhibitor	558	880	IPR032675	-
	Tpr7g1622	1094	Gene3D	-	371	455	IPR042197	-
	Tpr7g1622	1094	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	200	466	IPR027417	-
	Tpr7g1622	1094	Pfam	NB-ARC domain	217	437	IPR002182	GO:0043531
	Tpr7g1622	1094	SUPERFAMILY	L domain-like	526	844	-	-
	Tpr7g1622	1094	Gene3D	-	34	202	IPR035897	-
	Tpr7g1622	1094	SUPERFAMILY	Toll/Interleukin receptor TIR domain	35	178	IPR035897	-
	Tpr7g1622	1094	ProSiteProfiles	TIR domain profile.	36	201	IPR000157	GO:0007165
	Tpr7g1622	1094	CDD	AAA	213	370	-	-
	Tpr7g1622	1094	Gene3D	-	203	366	IPR027417	-
	Tpr7g1622	1094	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	44	1035	IPR044974	GO:0006952
	Tpr7g1622	1094	SMART	till_3	37	175	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g1622	Tpr-Chr7	18455484	18461020	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g1622	22	761	WRKY Transcription Factor Family	AT4G12020	30.971	4.94e-92	322

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g1622	-		-	cam:101494533	1460.66